Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00843 ATTGAGGTCCATTGGCCGTCGGAAGTATTCGATCCGATTCTCCCTGCCGCAGAAGCCGATTGCGAGGGCGAAACTCATTTCCAATGTTCTTCACATAATTTCGGAGCTATGGAGCATCTGTTCGAAACTTACTCAAATACTTCTGACGAAGACAACCAAGAAGATGAACCTCAGCCCAAGCGTTTAGCCCTCACCTCTTCAACATCGAAGAGACCCGAACATTCCCAATTCCAGCCGATGTTCCGGCCATCGCATAGCCCGGACTCCACTTCAGAGCCTCAAAAGGAGATTATGGTTCCTGGACGCTACATTTCCAAGAGGGAGCGAGCACTCATGAGTTCAGCTCCAGTTTCTAGGGCTCCAGAATCATTTCTGAATCCATCCGTCCAATCTTCAACCGTTGGAAGTCTTTCGGATTCTGATCTTCCGCGTGATATCTTGTCATTGTTGAGAAGTAGAGCTAAGAACTTTCTGCAGCAAGGCCTCATGCCTAAAAGGATGTCTGTAAGTCTCGACTGCCATACAAAAGCCGTCAATGCAGTTCAATGGTCACCAAGTCATGCTCATCTCCTTGCTTCTGCTGCTATGGATTACACAATCTGCATATGGAACATATGGAGCACTGAGCAGAAGCTAGCATTCAAGTCAAGCATCCACAACGCTGCAGTTAAAGATGTTGAATGGTCACAACAAGGATTATCTGTTCTTTCTTGTGGATATGATTGTTCTTCAAGATTGATTGATGTTGAGAAGGGAACAGAAGTTGGAGTATTCAAGGAGGATCAAGGCGTTGCAGTTGTAAAGTTCCACCCTAACAACCCAAGTCTCTTCCTTTCCGGTGGACTGAAAGGCAGCCTACGAATGTGGGATGTGAGAATTGGAAAAGTGGTCAACAAATACAATCGACGGCTTGGCCCGATTCTTGATGTTGAATTTACTCCTAATGGCAATCAATTCATTTCTTCTAGCGATGTTTCTTCAAGCAATAGCAGTGAAAGTTCTGTCATCGTTTGGGATGTCACAAGAGAAGTTTATATGGAAGCCTACACTTGTCCATGCGTGAGATGCCACCCATTTGATCCAGTTTTTATTGCCCAATCGAACGGAGATTATATTGCAATCTTCTCTCTAAACCCACCTTTCAAGTTAGACAAATACAAGAGATATGGAAGTCATGTAGTCTCAGGCTTTCCAATAAAATGTAACTTCAGCTTGGATGGCAAGCAAATCATCTCTGGTTCTTCAGATGGCTCTATATATTTTTACGATTATAAATCATCCTTGCTTATACACAAACTAAAAGCATCTGAACAGGCTTGCACAGACGTTGCCATCCACCCAACCTTACCTAATGTAATTGCTTCGTGTAGTTGGAGTGGAAATATTTCCGTGTTCCATAATTACATTGGTTTTGGTGAAGCAACACCCTTAATCATGATTAGTGGACCCCCTAAATTTAGGGCACTCGACCAACAAAGTGTGTCTGAAACAGTGGAAAGGACAGAGTGTTGTTTAGGTAATTACATTGGTTTTGGTGAAGCAACACCCTTAATCATGATTAGTGGACCCCCTAAATTTAGGGCACTCGACCAACAAAGTGTGTCTGAAACAGTGGAAAGGACAGAGTGTTGTTTAGGTGATTATGTCTTGTCTTGTGGAGAGGCACAAAAAGCAGCGAACGATTAA 1686 43.42 IEVHWPSEVFDPILPAAEADCEGETHFQCSSHNFGAMEHLFETYSNTSDEDNQEDEPQPKRLALTSSTSKRPEHSQFQPMFRPSHSPDSTSEPQKEIMVPGRYISKRERALMSSAPVSRAPESFLNPSVQSSTVGSLSDSDLPRDILSLLRSRAKNFLQQGLMPKRMSVSLDCHTKAVNAVQWSPSHAHLLASAAMDYTICIWNIWSTEQKLAFKSSIHNAAVKDVEWSQQGLSVLSCGYDCSSRLIDVEKGTEVGVFKEDQGVAVVKFHPNNPSLFLSGGLKGSLRMWDVRIGKVVNKYNRRLGPILDVEFTPNGNQFISSSDVSSSNSSESSVIVWDVTREVYMEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYGSHVVSGFPIKCNFSLDGKQIISGSSDGSIYFYDYKSSLLIHKLKASEQACTDVAIHPTLPNVIASCSWSGNISVFHNYIGFGEATPLIMISGPPKFRALDQQSVSETVERTECCLGNYIGFGEATPLIMISGPPKFRALDQQSVSETVERTECCLGDYVLSCGEAQKAAND 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4993215 4998785 - Cp4.1LG01g08340.1 Cpe01g00843 462156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00843 561 Gene3D - 151 466 IPR015943 GO:0005515
Cpe01g00843 561 ProSitePatterns Trp-Asp (WD) repeats signature. 191 205 IPR019775 -
Cpe01g00843 561 MobiDBLite consensus disorder prediction 59 93 - -
Cpe01g00843 561 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 37 466 - -
Cpe01g00843 561 ProSiteProfiles Trp-Asp (WD) repeats profile. 171 205 IPR001680 GO:0005515
Cpe01g00843 561 Pfam WD domain, G-beta repeat 170 204 IPR001680 GO:0005515
Cpe01g00843 561 Pfam WD domain, G-beta repeat 264 290 IPR001680 GO:0005515
Cpe01g00843 561 SMART WD40_4 293 339 IPR001680 GO:0005515
Cpe01g00843 561 SMART WD40_4 209 248 IPR001680 GO:0005515
Cpe01g00843 561 SMART WD40_4 251 290 IPR001680 GO:0005515
Cpe01g00843 561 SMART WD40_4 426 466 IPR001680 GO:0005515
Cpe01g00843 561 SMART WD40_4 385 423 IPR001680 GO:0005515
Cpe01g00843 561 SMART WD40_4 164 204 IPR001680 GO:0005515
Cpe01g00843 561 MobiDBLite consensus disorder prediction 46 96 - -
Cpe01g00843 561 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 171 205 - -
Cpe01g00843 561 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 299 IPR001680 GO:0005515
Cpe01g00843 561 SUPERFAMILY WD40 repeat-like 156 465 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00843 K24742 WDR25; WD repeat-containing protein 25 - csv:101214186 711.449
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00843 Cpe-Chr1:4993215 Cpe17g00855 Cpe-Chr17:6641703 3.70E-27 dispersed
Cpe01g00843 Cpe-Chr1:4993215 Cpe01g01528 Cpe-Chr1:9157421 1.15E-47 transposed
Cpe01g00843 Cpe-Chr1:4993215 Cpe09g00502 Cpe-Chr9:3338145 9.17E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g385 . . . . . . Bma10g00525 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1113 Cone15ag1127 . . . . Blo07g00929 . Bda05g00747 . . Bpe03g00812 . . . . . . . Car04g00870 . . Cpe01g00843 . . . . . . . . . . . . . . . . Chy06g01770 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008063 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 2 2 2 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00843 Cpe_Chr01 FPKM 2.151394 3.145097 2.789723 2.581909 1.731566 1.744363 1.529556 2.417952 1.851608 1.949454