Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00844 ATGGCGGAGGAGTTTCAGAGCACTGGAAACTGGTGGGACGCTTCTAGAAGCCGCTACGAAGCAGGAATATCCCCTTCTTCCTCCGCCATAACTACTTTCGTCGACCACCCGGACTCCGGCGCCGGCGCAGGCGACCCCAATTTGCACATCATGGGCTTGGGCCTCGATTGGAACCAACCCCTCTTTCGGGGCGGCGGAGAGAAGGCGGCGGAGAGCAGTTTCCGGTCGATGCTGCAGCCGGATAATATGAATTTGAATATGCAAGAAACAGGGCAACACCACCAACACCAACAACAACAGATTCAATGGATGAGATCGGAGAAGCTATATTCAGGGGAATCTCCAGCGACTGAATTCAAGCCAATAAACAGAGGGTTTTCACTAGATCACCACAACCAGCCTCCGCCACAGTTCAGCCCTTCTCATTACAGCACCGGCGACAGCACCATCACCAGTTTTCCAATCGACACCGCCGCCGCCGCTTTGTACGGAAACTCCACAACACTATTACAAGGCTTATTAGCCGGCGGAGGCAGCGAGCAACAGCAAGTCTCAGGAGCGGGTATGAACTTCCCATACAATACCCATTTCGGAATGAACTCCAACGAGTTAATGGCGGCAGCATCATGGTCGAACTCCAAAGTACCTCCGTTCTTAAGAAACTCACCACCAAAAGGAGCAGCACCGACGCCAGCACAGAGTCAGTTACAGTTTTCTAACAACACAGCATTCTGGAACGCGTCAGACATGAAAGACGCGAGGGCGAGTTATATTCCGGCGTCGTACAACGCTGCAGCCTTGGCGGGAGATAAATCAAAGAGTAGATCAGAGGGTGGAAAGAAAAGTGGGAATGATCAGAATCAACAACAAACGGGTGGCGGCGCCGGCGGTGGTGGTGTTGGTGGTGCGGTTAAAAGGCCTCGAAATGAAACGGCGCCGGGATTGCCAGCGTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCGCTCCAACAACTGGTCTCACCTTTCGGAAAGACTGATACCGCTTCAGTGCTGTCTGAAGCCATTGAATACATAAAGTTCCTCCATGAACAAGTCAGTGTATTGAGCACTCCATATTTGAAGAGCGGTGGTGCAGTACAGCAGCAGCAGCAGCAGAAATGGTGTGAGAAAAGGAAGGAAGGAGAAGGAAAAGAAGAGGATCTAAGAAGCAGAGGGCTTTGTTTAGTTCCAGTTTCAAGTACATTTCCGGTGACCCACGAAACCACCGTCGATTTCTGGACTCCAAGCTTCGGAGGAACCTTCCGATAA 1299 51.58 MAEEFQSTGNWWDASRSRYEAGISPSSSAITTFVDHPDSGAGAGDPNLHIMGLGLDWNQPLFRGGGEKAAESSFRSMLQPDNMNLNMQETGQHHQHQQQQIQWMRSEKLYSGESPATEFKPINRGFSLDHHNQPPPQFSPSHYSTGDSTITSFPIDTAAAALYGNSTTLLQGLLAGGGSEQQQVSGAGMNFPYNTHFGMNSNELMAAASWSNSKVPPFLRNSPPKGAAPTPAQSQLQFSNNTAFWNASDMKDARASYIPASYNAAALAGDKSKSRSEGGKKSGNDQNQQQTGGGAGGGGVGGAVKRPRNETAPGLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSVLSTPYLKSGGAVQQQQQQKWCEKRKEGEGKEEDLRSRGLCLVPVSSTFPVTHETTVDFWTPSFGGTFR 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5005140 5007045 + Cp4.1LG01g08430.1 Cpe01g00844 462157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00844 432 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 309 358 IPR011598 GO:0046983
Cpe01g00844 432 PANTHER TRANSCRIPTION FACTOR BHLH123 44 422 - -
Cpe01g00844 432 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 319 371 IPR036638 GO:0046983
Cpe01g00844 432 SMART finulus 320 364 IPR011598 GO:0046983
Cpe01g00844 432 MobiDBLite consensus disorder prediction 216 235 - -
Cpe01g00844 432 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 44 422 - -
Cpe01g00844 432 MobiDBLite consensus disorder prediction 269 319 - -
Cpe01g00844 432 Gene3D - 319 387 IPR036638 GO:0046983
Cpe01g00844 432 MobiDBLite consensus disorder prediction 120 143 - -
Cpe01g00844 432 CDD bHLH_AtbHLH_like 315 366 IPR045239 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00844 Cpe-Chr1:5005140 Cpe04g01116 Cpe-Chr4:9662278 2.84E-38 dispersed
Cpe10g00807 Cpe-Chr10:4577249 Cpe01g00844 Cpe-Chr1:5005140 3.36E-19 dispersed
Cpe15g00457 Cpe-Chr15:5643517 Cpe01g00844 Cpe-Chr1:5005140 6.38E-30 dispersed
Cpe20g00397 Cpe-Chr20:2244866 Cpe01g00844 Cpe-Chr1:5005140 3.49E-26 dispersed
Cpe01g00844 Cpe-Chr1:5005140 Cpe19g00980 Cpe-Chr19:6899236 1.24E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00844 - - csv:101220471 587.03