Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00851 ATGGTATCCCCTGAAACCACCAATTGGCTCTTTGATTATGCGTTAATCGATGATATTCCTGTTCCTGATGATGCCAATTTCTCTGCACCTACTGCCGGTTTCTCTTGGTCCATGCAACCCTTCAACGCCTCCTCTGATGTCAGTGCGGAAATTGAAGGATCATTGTTGGAATCAGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGGTCAGAACTGAATCAAGTTGTGCATCTAGCTCAAAAGCATGTAGGGAGAAGCTGCGGAGGGACAGATTAAATGACAAATTTTTGGAATTGGGTGCTACTCTGGAGCCTGGAAGGGCACTGAAGACCGACAAGGCTGCCATTTTGATTGATGCTGTTCGAATGGTCACTCAGTTACGCGGTGAAGCCCAGATGTTGAAGGACTCAAATACAAGCCTACTAGAGAAGATTAAAGATTTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAGCATAGGCTAAAACTGGAGAAGGAGAAGTTGGAGCAGCAACTAAAAGCCACGAATTCACAACCTGGCTTCATGCCTCCAGCCATCCCTGCAACTTTTGCTGCACAAGGCCAAGCACCTGGAAACAAGTTGGTTCCATTCATTGGCTACCCAGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCTGTTGACACCTCGCAAGATCACGTACTTCGACCCCCTGTTGCTTAA 708 47.6 MVSPETTNWLFDYALIDDIPVPDDANFSAPTAGFSWSMQPFNASSDVSAEIEGSLLESDGLKEPGSKKRVRTESSCASSSKACREKLRRDRLNDKFLELGATLEPGRALKTDKAAILIDAVRMVTQLRGEAQMLKDSNTSLLEKIKDLKAEKNELRDEKHRLKLEKEKLEQQLKATNSQPGFMPPAIPATFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5041732 5048586 - Cp4.1LG01g08120.1 Cpe01g00851 462164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00851 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983
Cpe01g00851 235 Coils Coil 131 179 - -
Cpe01g00851 235 Pfam Helix-loop-helix DNA-binding domain 80 127 IPR011598 GO:0046983
Cpe01g00851 235 PANTHER TRANSCRIPTION FACTOR ILR3 1 235 - -
Cpe01g00851 235 SMART finulus 82 133 IPR011598 GO:0046983
Cpe01g00851 235 CDD bHLH_AtILR3_like 84 156 - -
Cpe01g00851 235 Gene3D - 78 154 IPR036638 GO:0046983
Cpe01g00851 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 141 IPR036638 GO:0046983
Cpe01g00851 235 PANTHER BHLH TRANSCRIPTION FACTOR 1 235 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00851 Cpe-Chr1:5041732 Cpe06g00744 Cpe-Chr6:4666854 3.77E-105 dispersed
Cpe01g00851 Cpe-Chr1:5041732 Cpe02g00749 Cpe-Chr2:4764593 2.43E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48797 PF00010 HLH 3.50E-08 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00851 - - zju:107431674 349.362