Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00856 ATGCAGGCTGGGAAAACTTTAAGTGTTAGAAAATGGCAAGCAGCATTTAATCCAGAAGGGCAACTGGACATAGCAAAGACTCTAAATCGCATTCACCGTGGGGGGATCCATCCTTCAATTAGAGGAGAAGTGTGGGAGTTTCTTCTTGGTTGTTATGATCCTATGAGCACCATTGAGGAGAGAGAAGAAATTCGCCAGCGTCGAAGGATACAGTATGCGACATGGAAGGAAGACTGTCGACAAATGTTCCCTGTCATTGGAAGTGGTAGATACATCACAGCACCTGTAATCACAGAGGATGGTCAGCCTATTCAAGATCCGCTTGTACTTTTGGAAGCAAATCCAGAAAGTGGTCCGCTTGTGCCTCAAGACACCGGCACTGCTGATGCCGAGTCTGATGGTTCACAGCCGAATTCTTGTAGTAACATGGAACCTGTGACAGATCAGAAAATAATTCAGTGGATGCTTACTTTACATCAGATAGGCCTTGACGTGGTTCGGACTGACAGAACTTTGGTATTCTACGAAAAACAAGAAAACTTATCAAAACTTTGGGATATTCTTGCTGTTTATGCGTGGATAGATAAAGACATCGGCTACTGTCAAGGAATGAGTGATCTTTGTTCCCCCATGATAATGCTTCTCGAGGATGAAGGCGATTCGTTTTGGTGCTTTGAACGTTTGATGCGCAGATTGCGAGGGAACTTCCGATGCACTGATAGCTCGGTCGGCGTGGAGACTCAACTCAATAACTTGGCTGCTATCACACAAGTCATTGATCCAAAACTTCATCAACACTTGGAGACACTTGGGGGTGGTGACTATCTTTTCGCTTTCAGGATGCTTATGGTTTTATTCAGACGCGAGTTTTCCTTTTGCGATTCGTTATATCTCTGGGAGATGATGTGGGCTCTGGAATACGATCCCGATCTATTTGCGTTGTATGAAGAACCTGAAATGTGCAATGAGAAAGGCGAGGGATCGAAAGGAAAAGAAAAATCGATGCGCCAATGTGGGAAATACGAACGGGAGAATTTGAAAGCAAAGAACGCACAAGCTCCTCTTCCGATCTCGGTTTTCCTTGTTGCTAGTGTCTTGAAAGATAAGAGCACAAAGCTACTTACAGAAGCTCGGGGTCTGGACGACGTTGTGAAGATATTAAATGACATGACTGGAAATCTTGATGCCAAAAAAGCTTGCACTGGGGCAATGAAGCTTCACAAGAAGTATCTAAAAAAGGTAATATGCATTTGTTTGTTGAAGTATTACTTTTGA 1275 43.69 MQAGKTLSVRKWQAAFNPEGQLDIAKTLNRIHRGGIHPSIRGEVWEFLLGCYDPMSTIEEREEIRQRRRIQYATWKEDCRQMFPVIGSGRYITAPVITEDGQPIQDPLVLLEANPESGPLVPQDTGTADAESDGSQPNSCSNMEPVTDQKIIQWMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDIGYCQGMSDLCSPMIMLLEDEGDSFWCFERLMRRLRGNFRCTDSSVGVETQLNNLAAITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLFALYEEPEMCNEKGEGSKGKEKSMRQCGKYERENLKAKNAQAPLPISVFLVASVLKDKSTKLLTEARGLDDVVKILNDMTGNLDAKKACTGAMKLHKKYLKKVICICLLKYYF 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5063108 5066499 + Cp4.1LG01g08210.1 Cpe01g00856 462169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00856 424 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 244 410 IPR035969 -
Cpe01g00856 424 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 11 266 IPR035969 -
Cpe01g00856 424 ProSiteProfiles TBC/rab GAP domain profile. 35 306 IPR000195 -
Cpe01g00856 424 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 141 236 - -
Cpe01g00856 424 SMART tbc_4 32 324 IPR000195 -
Cpe01g00856 424 Pfam Rab-GTPase-TBC domain 138 304 IPR000195 -
Cpe01g00856 424 Gene3D - 242 416 - -
Cpe01g00856 424 MobiDBLite consensus disorder prediction 128 142 - -
Cpe01g00856 424 MobiDBLite consensus disorder prediction 115 142 - -
Cpe01g00856 424 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 4 413 - -
Cpe01g00856 424 PANTHER - 4 413 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00856 - - - cmo:103501604 763.837
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00856 Cpe-Chr1:5063108 Cpe17g01129 Cpe-Chr17:8564668 1.54E-170 dispersed
Cpe01g00856 Cpe-Chr1:5063108 Cpe13g00328 Cpe-Chr13:2949661 1.18E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g459 . . . . Bpe09g00186 . Bma10g00537 Bma13g01036 Cmo16g00908 . . . . . . . . . . . . . . . Cla10g00525 Cam10g0520 Cec10g0537 Cco10g0527 Clacu10g0542 Cmu10g1368 Cre10g0770 Cone6ag0083 Cone9ag0098 . . Lsi02g01909 Csa03g00532 . Cme06g02277 . Blo10g00812 Bda05g00732 Bda12g00897 . Bpe03g00801 . . Sed07g1928 . . . Cma16g00851 . Car16g00853 . Cpe01g00856 Bhi11g00647 Tan01g1682 Cmetu06g1724 . . Mch10g1229 . . . . . . . . Lsi05g00620 . . Cme01g01052
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004197 2 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 6 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00856 Cpe_Chr01 FPKM 47.00869 47.973385 20.857599 22.272718 34.77504 34.385468 35.511578 22.621916 22.776886 21.803225