Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00859 ATGAAGCAGAAATTCAAATCCAAGAAGTCGTCTGGCAAGCAGAAGCGTCTATCCGAAATTGAAGAAATTAAGCTCTTGAATTCATGGATTCAATCCCAGAAACCCGACTCAGGCTCTAACCCGATGTCGCTTCCTCCACCTCCTGCGGGTGCTCCCCTTGGCCGCATCGACGCCGATACTTACTCTTGTTACGCCGGAGCTACTAAGTTTGATCAGTTGCCGATTTCGAACAAGACCAAGGATGGGTTGCGGAAAGCTGAATTCGTTGATATGACGGACATACAGAGGGCTTCACTGCCTCACGCCCTTTGTGGTCGAGATATTCTTGGTGCAGCCAAAACTGGTTCGGGAAAGACGCTAGCTTTTCTCATACCTGTTCTTGAGAAGTTGTATAGAGAGAGATGGGGTCCTGAGGATGGAGTAGGGAGTATAATAATATCTCCCACAAGAGAATTAGGAGCTCAGCTTTTTGATGTTTTAAAAGCTGTTGGGAAATTTCATAATTTCAGTGCTGGCCTTTTAATTGGTGGTCGTAAAGATGTTAACACTGAGAAGGAGCATGTGAATGAGTTGAACATTCTTGTTTGCACTCCCGGTCGACTCCTTCAGCACATGGACGAGACTCCAAATTTTGATTGTTCACAGTTGCAGGTTTTAGTCCTTGATGAAGCTGATCGTATTCTTGATGTCGGATTTAAGAAGACTTTAAATGCGATTATTTCACAGCTACCTAAGCACAGACAAACCTTTCTGTTCTCGGCGACTCAAACAAAGTCTGTTCAGGATCTTGCCAGACTCAGTTTGAAAGATCCTGAGTACCTTAGTGTTCATGAAGAATCTGTGACAGCTACCCCCAATAGTTTACAACAAACTGCTTTGGTTGTTCCTCTCGAGCAAAAGCTAGACATGTTATGGAGCTTTATAAAGGCACATCTTAATTCTAAGATTCTTGTGTTTCTCTCAAGCTGCAAGCAGGTGAAATTTGTTTTTGAAACTTTCAAAAAGCTGCGTCCTGGAATCCCATTGAAGTGCCTCCATGGAAGGATGAAGCAGGACAAAAGGATGGGGATATATTCTGAGTTCTGTGAGAAGCGGTCAGTCCTCTTCTCAACAGATGTAGCCTCTAGAGGTCTTGATTTTAATAAGGCTGTTGACTGGGTTGTACAGGTTGATTGCCCAGAAGATGTGGCTTCTTACATACATAGAGTTGGCCGCACTGCTCGGTACCATTCAGGTGGGAGATCAGTTTTATTTCTTATGCCCTCGGAGATGAAAATGCTTGAACAATTAGAATCTTCAAAAGTACCTATTCAGCTTATCAAGTATGGTGACTTTAAAGAAAGCAACCAAGGACTTCTTCCTCCTACTGATATCCCTACTAGTGAAGTTGAAGATGCTGTGCCACGTACTCGGATTTTGAAGAAAAAGAAGTTGAAGATCAATGTCCACAGACCATTAGGGACGAGAGTCAGTTTTGATGACGAGGGCAACCCACTTGCCCCTCTTGCTAAGCTAGCTGACATCAAAAGTAGCAATGAGACATTTGTAGTCGACAAAGATCTAAAAAATGAGTTTTACAAAAAGAGGAGGGAAGAGTTGAAACAAGCTGACAAGGAAGACAAACTTCTCAATCATAATCGCCTTAAGGAGAAGCGGAAAGAGAAGATGAATAAGATGAAGAAGAGGGCTGCCAAAGAAATTGAGGAGGAGGACGACGACGTTTCTGCGTCTGAAGAAGACAGACCTCAGAAAAGGTCCAAGAAATTTGTCGACAGTGATAGCGACATTGACAATAAAGCGGACTTAAATACAGAGTCGATTTCAGTGGCAGAACAAGAGGAGTTGGCTCTCAAATTACTAAGTACTCTGCGTCCATGA 1878 43.18 MKQKFKSKKSSGKQKRLSEIEEIKLLNSWIQSQKPDSGSNPMSLPPPPAGAPLGRIDADTYSCYAGATKFDQLPISNKTKDGLRKAEFVDMTDIQRASLPHALCGRDILGAAKTGSGKTLAFLIPVLEKLYRERWGPEDGVGSIIISPTRELGAQLFDVLKAVGKFHNFSAGLLIGGRKDVNTEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKKTLNAIISQLPKHRQTFLFSATQTKSVQDLARLSLKDPEYLSVHEESVTATPNSLQQTALVVPLEQKLDMLWSFIKAHLNSKILVFLSSCKQVKFVFETFKKLRPGIPLKCLHGRMKQDKRMGIYSEFCEKRSVLFSTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYHSGGRSVLFLMPSEMKMLEQLESSKVPIQLIKYGDFKESNQGLLPPTDIPTSEVEDAVPRTRILKKKKLKINVHRPLGTRVSFDDEGNPLAPLAKLADIKSSNETFVVDKDLKNEFYKKRREELKQADKEDKLLNHNRLKEKRKEKMNKMKKRAAKEIEEEDDDVSASEEDRPQKRSKKFVDSDSDIDNKADLNTESISVAEQEELALKLLSTLRP 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5080642 5085439 + Cp4.1LG01g08180.1 Cpe01g00859 462172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00859 625 Pfam DEAD/DEAH box helicase 92 263 IPR011545 GO:0003676|GO:0005524
Cpe01g00859 625 SMART ultradead3 87 291 IPR014001 -
Cpe01g00859 625 Coils Coil 546 580 - -
Cpe01g00859 625 MobiDBLite consensus disorder prediction 31 51 - -
Cpe01g00859 625 CDD SF2_C_DEAD 288 419 - -
Cpe01g00859 625 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 296 453 IPR001650 -
Cpe01g00859 625 PANTHER RNA HELICASE 60 430 - -
Cpe01g00859 625 Gene3D - 286 484 IPR027417 -
Cpe01g00859 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 276 IPR027417 -
Cpe01g00859 625 Gene3D - 57 280 IPR027417 -
Cpe01g00859 625 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 99 274 IPR014001 -
Cpe01g00859 625 CDD DEADc_DDX10 79 277 - -
Cpe01g00859 625 Pfam Helicase conserved C-terminal domain 300 409 IPR001650 -
Cpe01g00859 625 MobiDBLite consensus disorder prediction 537 608 - -
Cpe01g00859 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 426 IPR027417 -
Cpe01g00859 625 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 68 96 IPR014014 GO:0003724
Cpe01g00859 625 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 60 430 - -
Cpe01g00859 625 MobiDBLite consensus disorder prediction 577 600 - -
Cpe01g00859 625 SMART helicmild6 327 410 IPR001650 -
Cpe01g00859 625 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 220 228 IPR000629 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00859 K14776 DDX10, DBP4; ATP-dependent RNA helicase DDX10/DBP4 [EC:3.6.4.13] - csv:101213480 807.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00859 Cpe-Chr1:5080642 Cpe20g00101 Cpe-Chr20:537703 2.88E-100 dispersed
Cpe01g00859 Cpe-Chr1:5080642 Cpe13g00299 Cpe-Chr13:2494949 3.57E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g503 . . . . Bpe09g00180 . . Bma13g01054 . . . . . . . . . . . . . . . . Cla10g00512 Cam10g0507 Cec10g0524 Cco10g0511 Clacu10g0528 Cmu10g1354 Cre10g0758 . . Cone14ag1140 Cone15ag1158 . Csa03g00520 . Cme06g02259 . Blo10g00825 . Bda12g00904 . . . . Sed14g0162 . . Cma04g00948 . . . . Cpe01g00859 Bhi11g00629 Tan01g1698 Cmetu12g0970 . . Mch10g1261 . . . . . . . . Lsi05g00605 . Chy06g01810 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010643 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00859 Cpe_Chr01 FPKM 5.27027 4.518182 10.971966 13.460275 9.210803 9.687954 8.223953 26.126722 20.265982 28.017273