Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00878 ATGAACCTGAGCATTGTTCTTTTCTGGATCATAGCGATCTCGATCCATATCGTTGGAGTTGTTTCTAAAACCAAAGCGCCAGATGTTTCTGCACTGAACGTGATGTACAGTAGTTTAAATTCACCATCACAATTGTCTGGTTGGGGTTCAAGTGGGGGTGACCCATGTGGCGACTCTTGGGAAGGGATCCAATGCTCAGGAACATCCGTCACTGAAATGTACTCCAAAATTTTCTCTTCTTTTTCCTTAATTAGGATGTTAATTACGTTGGATTGTTCTTGCATTAACTTCAAGGGATTCTACAGACATTTATCAGACTTTGGACTAAGTGGATCAATGGGTTACCAGCTCTCAAATTTGGTTTCTGTCACCTACTTTGATTTGAGCAAGAACAACCTCAATGGCGATATCCCGTATCAGCTTCCTCCTAATGCCGTTCATGTCGATCTTTCTGAAAACAGCTTCACTGGTAGCGTGCCTTATTCGATTTCTCAAATGGGCGATCTTAATTTTTTAAATCTTGCTCATAATCAGCTTAGTAACCAATTGAGTGACATGTTTGGCAAGCTTCCTAAACTTAAAAGTCTGGATCTCTCATACAACTCAATATCAGGAACCTTACCTCAAAGTTTTAACAAGCTTTCAAGCCTCACCACATTGCACCTTCAAGAGAATCAATTTAAAGGTTCAATTAATGTTCTTGCTGACCTTCCACTTGATGATCTGAACGTCGCAAATAACCAATTCACCGGATGGATTCCTGCGACTCTTGAGGACATTAATAATTTGGAAACTGTAGGAAATTCTTGGTCAACTGGGCCAGCTCCTCCTCCACCACCCGGCACAGCGGCCGCTAACAAAAAATCCAACAAAGACAAGTCGAGCAACAAATCCTCAAGCATCAGCGGCCTGGTCATAGCTGGAATAGCGATGGGGGTTTTGGTATTAATCGCCATTCTCATTGCATTGATCTCAAGAAGGTCTCCTCCTTCCCATTATCTTGATGAAGACACAAACCCACACAGATCCTTCACTCCACTTACATCCCAAGAACTCACCAAAGGTTTGCACAATGGAGATGATAGAAAATCAATAAACTCAGATACCTCTGTTGACATAAAGGCTCTTCAGAATGCTTCGAGTGGGCATATTAGGCCTCCTCCGCCCTTCGATCCTGTGCAGGCCTTCAGTGATAATCAGTTTGCCAGCCGTCTCAACTCCAGAAGAAGCACTTCTGTTCGTGCCATTTCTTACTCCTTGGTTGATTTGCAAGCTGCTACAGCTAATTTTTCGACTGCTCGCCTTCTTGGTGAGGGCACTATTGGACGTGTCTATAAGGCCAAGTATGGAGATGGAAAGGTCTTAGCTGTGAAGAAGATAGATTCATCAGTTTTTGAAGGAAGAAGAAAAGAAGAATTTTCAGAAGTAGTTGCAATCGTCTCAAAGCTTCGCCACACAAACCTTACAGAAGTGGTTGGTTTTTGTTCAGAACAGGGACATAACATGCTGCTTTACCAATATTTCATGAATGGTTCACTTCATGAGTTTCTACACATGTCTGATGACTTCAGTAAACCACTCACCTGGAATACTCGAGTCAGAATCGCTTTGGGGACAGCCCGAGCTCTTGAGTACCTTCATGAAGTTTGCTCACCATCTATAATTCACATGAATATCAAGTCCTCGAATATATTGCTCGATACCGATCTCAACCCTCGAATATCAGACTATGGTTTGGCCACTTTTTATAAGAATAGAAGGGAAGTCCCTGGAGTTGGATATGATGCTCCAGAATGCAAAAAGGGTTCAAGTTATACAATGAAGAGTGACATTTACAGTGTGGGAGTGGTGATGTTGGAATTGTTGACAGGGCGGATGCCGTTTGACTCTTCGAAGGCAAGGGTGGAGCAAAGTCTAGTCCGGTGGGCTACCCCACAGCTGCACGACATAGATGCATTGGACAAAATGGTGGATCCAGCATTGAGAGGGTTATATCCACCAAAATCAGTGTCTAGATTTGCAGATATCATTGCCCTTTGTGTTCAATCGGAGCCTGAATTTCGGCCTCCCTCGTCGGAGGTGGTGCAAGCCTTGGTAACTTTGGTTCAACGATCCAGTATGAATGTGAGAGATGATCTTGGAAGCTCCCGACGAGTGGATGATTATGACTATTAA 2175 43.26 MNLSIVLFWIIAISIHIVGVVSKTKAPDVSALNVMYSSLNSPSQLSGWGSSGGDPCGDSWEGIQCSGTSVTEMYSKIFSSFSLIRMLITLDCSCINFKGFYRHLSDFGLSGSMGYQLSNLVSVTYFDLSKNNLNGDIPYQLPPNAVHVDLSENSFTGSVPYSISQMGDLNFLNLAHNQLSNQLSDMFGKLPKLKSLDLSYNSISGTLPQSFNKLSSLTTLHLQENQFKGSINVLADLPLDDLNVANNQFTGWIPATLEDINNLETVGNSWSTGPAPPPPPGTAAANKKSNKDKSSNKSSSISGLVIAGIAMGVLVLIAILIALISRRSPPSHYLDEDTNPHRSFTPLTSQELTKGLHNGDDRKSINSDTSVDIKALQNASSGHIRPPPPFDPVQAFSDNQFASRLNSRRSTSVRAISYSLVDLQAATANFSTARLLGEGTIGRVYKAKYGDGKVLAVKKIDSSVFEGRRKEEFSEVVAIVSKLRHTNLTEVVGFCSEQGHNMLLYQYFMNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDTDLNPRISDYGLATFYKNRREVPGVGYDAPECKKGSSYTMKSDIYSVGVVMLELLTGRMPFDSSKARVEQSLVRWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPSSEVVQALVTLVQRSSMNVRDDLGSSRRVDDYDY 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5159423 5164395 - Cp4.1LG01g07940.1 Cpe01g00878 462191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00878 724 Gene3D Ribonuclease Inhibitor 25 304 IPR032675 -
Cpe01g00878 724 SUPERFAMILY Protein kinase-like (PK-like) 410 698 IPR011009 -
Cpe01g00878 724 Pfam Leucine rich repeat 185 227 IPR001611 GO:0005515
Cpe01g00878 724 Gene3D Transferase(Phosphotransferase) domain 1 508 720 - -
Cpe01g00878 724 SUPERFAMILY L domain-like 59 265 - -
Cpe01g00878 724 Gene3D Phosphorylase Kinase; domain 1 394 507 - -
Cpe01g00878 724 PANTHER OS01G0253100 PROTEIN 103 720 IPR045271 GO:0004714|GO:0006468
Cpe01g00878 724 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 103 720 - -
Cpe01g00878 724 ProSiteProfiles Protein kinase domain profile. 430 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00878 724 PANTHER OS01G0253100 PROTEIN 19 73 IPR045271 GO:0004714|GO:0006468
Cpe01g00878 724 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 19 73 - -
Cpe01g00878 724 MobiDBLite consensus disorder prediction 266 298 - -
Cpe01g00878 724 Pfam Protein kinase domain 431 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00878 724 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cpe01g00878 724 SMART LRR_typ_2 120 148 IPR003591 -
Cpe01g00878 724 SMART LRR_typ_2 214 236 IPR003591 -
Cpe01g00878 724 SMART LRR_typ_2 190 213 IPR003591 -
Cpe01g00878 724 SMART LRR_typ_2 166 189 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00878 Cpe-Chr1:5159423 Cpe13g00020 Cpe-Chr13:181595 0 dispersed
Cpe01g00878 Cpe-Chr1:5159423 Cpe03g01037 Cpe-Chr3:8458185 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62133 PF00069 Pkinase 5.40E-42 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00878 - - csv:101209107 1097.42