Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00878 ATGAACCTGAGCATTGTTCTTTTCTGGATCATAGCGATCTCGATCCATATCGTTGGAGTTGTTTCTAAAACCAAAGCGCCAGATGTTTCTGCACTGAACGTGATGTACAGTAGTTTAAATTCACCATCACAATTGTCTGGTTGGGGTTCAAGTGGGGGTGACCCATGTGGCGACTCTTGGGAAGGGATCCAATGCTCAGGAACATCCGTCACTGAAATGTACTCCAAAATTTTCTCTTCTTTTTCCTTAATTAGGATGTTAATTACGTTGGATTGTTCTTGCATTAACTTCAAGGGATTCTACAGACATTTATCAGACTTTGGACTAAGTGGATCAATGGGTTACCAGCTCTCAAATTTGGTTTCTGTCACCTACTTTGATTTGAGCAAGAACAACCTCAATGGCGATATCCCGTATCAGCTTCCTCCTAATGCCGTTCATGTCGATCTTTCTGAAAACAGCTTCACTGGTAGCGTGCCTTATTCGATTTCTCAAATGGGCGATCTTAATTTTTTAAATCTTGCTCATAATCAGCTTAGTAACCAATTGAGTGACATGTTTGGCAAGCTTCCTAAACTTAAAAGTCTGGATCTCTCATACAACTCAATATCAGGAACCTTACCTCAAAGTTTTAACAAGCTTTCAAGCCTCACCACATTGCACCTTCAAGAGAATCAATTTAAAGGTTCAATTAATGTTCTTGCTGACCTTCCACTTGATGATCTGAACGTCGCAAATAACCAATTCACCGGATGGATTCCTGCGACTCTTGAGGACATTAATAATTTGGAAACTGTAGGAAATTCTTGGTCAACTGGGCCAGCTCCTCCTCCACCACCCGGCACAGCGGCCGCTAACAAAAAATCCAACAAAGACAAGTCGAGCAACAAATCCTCAAGCATCAGCGGCCTGGTCATAGCTGGAATAGCGATGGGGGTTTTGGTATTAATCGCCATTCTCATTGCATTGATCTCAAGAAGGTCTCCTCCTTCCCATTATCTTGATGAAGACACAAACCCACACAGATCCTTCACTCCACTTACATCCCAAGAACTCACCAAAGGTTTGCACAATGGAGATGATAGAAAATCAATAAACTCAGATACCTCTGTTGACATAAAGGCTCTTCAGAATGCTTCGAGTGGGCATATTAGGCCTCCTCCGCCCTTCGATCCTGTGCAGGCCTTCAGTGATAATCAGTTTGCCAGCCGTCTCAACTCCAGAAGAAGCACTTCTGTTCGTGCCATTTCTTACTCCTTGGTTGATTTGCAAGCTGCTACAGCTAATTTTTCGACTGCTCGCCTTCTTGGTGAGGGCACTATTGGACGTGTCTATAAGGCCAAGTATGGAGATGGAAAGGTCTTAGCTGTGAAGAAGATAGATTCATCAGTTTTTGAAGGAAGAAGAAAAGAAGAATTTTCAGAAGTAGTTGCAATCGTCTCAAAGCTTCGCCACACAAACCTTACAGAAGTGGTTGGTTTTTGTTCAGAACAGGGACATAACATGCTGCTTTACCAATATTTCATGAATGGTTCACTTCATGAGTTTCTACACATGTCTGATGACTTCAGTAAACCACTCACCTGGAATACTCGAGTCAGAATCGCTTTGGGGACAGCCCGAGCTCTTGAGTACCTTCATGAAGTTTGCTCACCATCTATAATTCACATGAATATCAAGTCCTCGAATATATTGCTCGATACCGATCTCAACCCTCGAATATCAGACTATGGTTTGGCCACTTTTTATAAGAATAGAAGGGAAGTCCCTGGAGTTGGATATGATGCTCCAGAATGCAAAAAGGGTTCAAGTTATACAATGAAGAGTGACATTTACAGTGTGGGAGTGGTGATGTTGGAATTGTTGACAGGGCGGATGCCGTTTGACTCTTCGAAGGCAAGGGTGGAGCAAAGTCTAGTCCGGTGGGCTACCCCACAGCTGCACGACATAGATGCATTGGACAAAATGGTGGATCCAGCATTGAGAGGGTTATATCCACCAAAATCAGTGTCTAGATTTGCAGATATCATTGCCCTTTGTGTTCAATCGGAGCCTGAATTTCGGCCTCCCTCGTCGGAGGTGGTGCAAGCCTTGGTAACTTTGGTTCAACGATCCAGTATGAATGTGAGAGATGATCTTGGAAGCTCCCGACGAGTGGATGATTATGACTATTAA 2175 43.26 MNLSIVLFWIIAISIHIVGVVSKTKAPDVSALNVMYSSLNSPSQLSGWGSSGGDPCGDSWEGIQCSGTSVTEMYSKIFSSFSLIRMLITLDCSCINFKGFYRHLSDFGLSGSMGYQLSNLVSVTYFDLSKNNLNGDIPYQLPPNAVHVDLSENSFTGSVPYSISQMGDLNFLNLAHNQLSNQLSDMFGKLPKLKSLDLSYNSISGTLPQSFNKLSSLTTLHLQENQFKGSINVLADLPLDDLNVANNQFTGWIPATLEDINNLETVGNSWSTGPAPPPPPGTAAANKKSNKDKSSNKSSSISGLVIAGIAMGVLVLIAILIALISRRSPPSHYLDEDTNPHRSFTPLTSQELTKGLHNGDDRKSINSDTSVDIKALQNASSGHIRPPPPFDPVQAFSDNQFASRLNSRRSTSVRAISYSLVDLQAATANFSTARLLGEGTIGRVYKAKYGDGKVLAVKKIDSSVFEGRRKEEFSEVVAIVSKLRHTNLTEVVGFCSEQGHNMLLYQYFMNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDTDLNPRISDYGLATFYKNRREVPGVGYDAPECKKGSSYTMKSDIYSVGVVMLELLTGRMPFDSSKARVEQSLVRWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPSSEVVQALVTLVQRSSMNVRDDLGSSRRVDDYDY 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5159423 5164395 - Cp4.1LG01g07940.1 Cpe01g00878 462191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00878 724 Gene3D Ribonuclease Inhibitor 25 304 IPR032675 -
Cpe01g00878 724 SUPERFAMILY Protein kinase-like (PK-like) 410 698 IPR011009 -
Cpe01g00878 724 Pfam Leucine rich repeat 185 227 IPR001611 GO:0005515
Cpe01g00878 724 Gene3D Transferase(Phosphotransferase) domain 1 508 720 - -
Cpe01g00878 724 SUPERFAMILY L domain-like 59 265 - -
Cpe01g00878 724 Gene3D Phosphorylase Kinase; domain 1 394 507 - -
Cpe01g00878 724 PANTHER OS01G0253100 PROTEIN 103 720 IPR045271 GO:0004714|GO:0006468
Cpe01g00878 724 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 103 720 - -
Cpe01g00878 724 ProSiteProfiles Protein kinase domain profile. 430 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00878 724 PANTHER OS01G0253100 PROTEIN 19 73 IPR045271 GO:0004714|GO:0006468
Cpe01g00878 724 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 19 73 - -
Cpe01g00878 724 MobiDBLite consensus disorder prediction 266 298 - -
Cpe01g00878 724 Pfam Protein kinase domain 431 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00878 724 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cpe01g00878 724 SMART LRR_typ_2 120 148 IPR003591 -
Cpe01g00878 724 SMART LRR_typ_2 214 236 IPR003591 -
Cpe01g00878 724 SMART LRR_typ_2 190 213 IPR003591 -
Cpe01g00878 724 SMART LRR_typ_2 166 189 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00878 - - - csv:101209107 1097.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00878 Cpe-Chr1:5159423 Cpe13g00020 Cpe-Chr13:181595 0 dispersed
Cpe01g00878 Cpe-Chr1:5159423 Cpe03g01037 Cpe-Chr3:8458185 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g00762 CST 33 782 Strubbelig Receptor Gene Family AT4G03390 62.4 1.9e-206 716.5
Cpe15g00790 CST 68 761 Strubbelig Receptor Gene Family AT4G03390 60.0 2.7e-181 632.9
Cpe12g00545 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.8 8.9e-92 335.5
Cpe17g00420 CCT,CST 417 720 Strubbelig Receptor Gene Family AT4G03390 55.8 1.9e-89 327.8
Cpe03g00381 . 17 738 Strubbelig Receptor Gene Family AT5G06820 52.7 1.1e-179 627.5
Cpe08g01391 CCT 9 720 Strubbelig Receptor Gene Family AT5G06820 52.6 3.1e-179 625.9
Cpe01g00878 . 10 724 Strubbelig Receptor Gene Family AT1G78980 56.9 7.1e-181 631.3
Cpe03g01037 . 23 724 Strubbelig Receptor Gene Family AT1G78980 51.8 1.3e-153 540.8
Cpe17g00420 CCT,CST 44 723 Strubbelig Receptor Gene Family AT1G78980 50.4 5.0e-126 449.1
Cpe15g00790 CST 458 753 Strubbelig Receptor Gene Family AT1G78980 52.9 1.1e-83 308.5
Cpe04g00762 CST 32 656 Strubbelig Receptor Gene Family AT2G20850 50.6 1.2e-129 461.1
Cpe01g00878 . 5 702 Strubbelig Receptor Gene Family AT3G13065 50.4 8.9e-136 481.5
Cpe17g00420 CCT,CST 38 718 Strubbelig Receptor Gene Family AT3G13065 50.2 6.9e-104 375.6
Cpe12g00545 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.1 7.9e-100 362.1
Cpe20g00626 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.1 4.2e-85 313.2
Cpe12g00545 CCT,CST 375 685 Strubbelig Receptor Gene Family AT1G11130 50.8 2.3e-83 307.4
Cpe17g00420 CCT,CST 430 718 Strubbelig Receptor Gene Family AT1G11130 52.6 1.2e-82 305.1
Cpe04g00762 CST 32 656 Strubbelig Receptor Gene Family AT2G20850 50.6 1.2e-129 461.1
Cpe03g00381 . 17 738 Strubbelig Receptor Gene Family AT5G06820 52.7 1.1e-179 627.5
Cpe08g01391 CCT 9 720 Strubbelig Receptor Gene Family AT5G06820 52.6 3.1e-179 625.9
Cpe04g00762 CST 33 782 Strubbelig Receptor Gene Family AT4G03390 62.4 1.9e-206 716.5
Cpe15g00790 CST 68 761 Strubbelig Receptor Gene Family AT4G03390 60.0 2.7e-181 632.9
Cpe12g00545 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.8 8.9e-92 335.5
Cpe17g00420 CCT,CST 417 720 Strubbelig Receptor Gene Family AT4G03390 55.8 1.9e-89 327.8
Cpe01g00878 . 5 702 Strubbelig Receptor Gene Family AT3G13065 50.4 8.9e-136 481.5
Cpe17g00420 CCT,CST 38 718 Strubbelig Receptor Gene Family AT3G13065 50.2 6.9e-104 375.6
Cpe12g00545 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.1 7.9e-100 362.1
Cpe01g00878 . 10 724 Strubbelig Receptor Gene Family AT1G78980 56.9 7.1e-181 631.3
Cpe03g01037 . 23 724 Strubbelig Receptor Gene Family AT1G78980 51.8 1.3e-153 540.8
Cpe17g00420 CCT,CST 44 723 Strubbelig Receptor Gene Family AT1G78980 50.4 5.0e-126 449.1
Cpe15g00790 CST 458 753 Strubbelig Receptor Gene Family AT1G78980 52.9 1.1e-83 308.5
Cpe03g01037 . 1 724 Strubbelig Receptor Gene Family AT1G53730 59.6 2.3e-211 732.6
Cpe02g01752 CCT 557 1203 Strubbelig Receptor Gene Family AT1G53730 56.9 7.8e-183 637.9
Cpe17g00420 CCT,CST 33 731 Strubbelig Receptor Gene Family AT1G53730 59.1 8.9e-179 624.4
Cpe12g00545 CCT,CST 1 698 Strubbelig Receptor Gene Family AT1G53730 59.9 1.3e-177 620.5
Cpe20g00626 . 4 689 Strubbelig Receptor Gene Family AT1G53730 50.5 8.7e-142 501.5
Cpe15g00790 CST 461 753 Strubbelig Receptor Gene Family AT1G53730 57.3 6.6e-89 325.9
Cpe03g01037 . 8 719 Strubbelig Receptor Gene Family AT3G14350 50.8 2.0e-180 629.8
Cpe17g00420 CCT,CST 42 729 Strubbelig Receptor Gene Family AT3G14350 54.2 5.2e-160 562.0
Cpe12g00545 CCT,CST 6 702 Strubbelig Receptor Gene Family AT3G14350 53.6 9.2e-157 551.2
Cpe15g00790 CST 460 761 Strubbelig Receptor Gene Family AT3G14350 52.6 7.2e-77 285.8
Cpe20g00626 . 344 711 Strubbelig Receptor Gene Family AT4G22130 79.6 3.2e-168 589.0
Cpe03g01037 . 408 731 Strubbelig Receptor Gene Family AT4G22130 63.8 2.1e-119 426.8
Cpe12g00545 CCT,CST 391 707 Strubbelig Receptor Gene Family AT4G22130 64.6 2.6e-117 419.9
Cpe17g00420 CCT,CST 424 733 Strubbelig Receptor Gene Family AT4G22130 65.4 2.9e-116 416.4
Cpe04g00762 CST 450 774 Strubbelig Receptor Gene Family AT4G22130 56.8 3.5e-106 382.9
Cpe15g00790 CST 458 753 Strubbelig Receptor Gene Family AT4G22130 60.3 8.7e-105 378.3
Cpe01g00878 . 407 724 Strubbelig Receptor Gene Family AT4G22130 55.7 5.8e-101 365.5
Cpe02g00968 . 332 573 Strubbelig Receptor Gene Family AT4G22130 75.2 5.7e-96 349.0
Cpe03g00381 . 392 714 Strubbelig Receptor Gene Family AT4G22130 51.7 8.5e-92 335.1
Cpe02g01752 CCT 953 1219 Strubbelig Receptor Gene Family AT4G22130 51.1 1.8e-86 317.4
Cpe03g00382 CCT 281 582 Strubbelig Receptor Gene Family AT4G22130 50.3 1.1e-80 298.1
Cpe10g00833 . 439 622 Strubbelig Receptor Gene Family AT4G22130 54.9 2.4e-54 210.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010758 0 1 1 1 0 1 2 0 0 1 1 1 2 1 0 2 1 1 2 1 1 0 1 0 0 1 1 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62133 PF00069 Pkinase 5.40E-42 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00878 Cpe_Chr01 FPKM 0.056889 0.0 0.066655 0.0 0.0 0.0 0.0 0.0 0.0 0.0