Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00883 ATGGCTGCATCTTCTTCTTCCTCACTTCCAGTTTATGGCGTTGGAGAAGAAGCATCTCCCCAGATGAGGCCTCCCTCTAGTTCTTCCACTAAGAAAAAAAGAAACCAACCAGGAACTCCAAGCAAGTATTACCCAGATGCGGAGGTCATAGCCTTGAGTCCCAAGACCCTAATGGCTACAAACAGATTCATTTGTGAAGTTTGTAACAAAGGGTTTCAAAGAGAGCAAAACCTTCAGCTTCATAGACGTGGTCACAACTTGCCTTGGAAGCTAAAGCAGAAGTCCACTAAAGACCCTAAGCGCAAGGTTTACTTATGTCCTGAACCCACATGTGTCCACCACCACCCTTCTAGGGCCCTTGGTGACTTAACCGGCATCAAAAAACACTACTCTAGAAAACATGGCGAGAAGAAATGGAAGTGTGATAAGTGCTCTAAGCGTTACGCCGTTCAGTCCGACTGGAAAGCTCACTCCAAAACGTGCGGTACTCGCGAGTATCGTTGCGATTGTGGCACTCTCTTCTCCAGACGGGATAGTTTTATTACTCATCGAGCTTTTTGTGATGCATTGGCTCAAGAAAGTTCTAGGCATCCTCCAAGTATTGGAAGGCATTTATATGGAGCTCAAGAGAATCCCAATATCATTAATCAATCTGCTCCTGGACATTTTACTCATCTCCTTCCTTCATCCATGGGGTCGTCCTTTCGGCCCATGTCGGCGTCACCGCCGTTCTTCTTGACGGAGCAGAATAATCAGAGTAGCTTCCATGAGGATCAGCCAAACCAATCCCAACAAGGGTTCTTTGGAAACAAGGGGTTTCATGGGGTGATGCAATTCCCTGATATCCAATCCCATACCAATAATTGTGCTTCCAATGTCTTCAATTTGGGGTTCATACCAAATTCTACTAGCGAGGGTACTACCAATTTGAGCAATAACAATGACACCAACACTATTACTACCAATTTGAATCAATTCAGTGCCACAAACAATGCCAACAATCAAGCTGCTGCCTCTAACATTTTCGCCGTAATCGGCGATCAGATGAATTCAGCTGCACTCCCATCTCTCTACAGCAATGCCTCGGCTGTCGGTGGTGGAGGCGGTAGTGGTATCGGTGGTTCGTTCCCACATATGTCGGCGACAGCGCTTCTTCAGAAGGCAGCTCAATTGGGTTCAACGACGTCAAGTACCAACACGACATCGACGTTGCTAAGGTCGTTTGGAAGCTCCTCGAACTCAGGGGGGAAAGCGTCAGACAGAACGCTTTTCCCATTGAGTTACGGAGGAGTAACATTCGGGGAACATGAGAGCAATCTTCAGGATATGATGAATTCATTTGGAAGCGGGAGCTCGGGAAGTGGGATGTTCGGGAGCGGGATGAACTCGTTCGGTGGATTGGAGTGCAGTAGTAGTAGAACCAACATGGAAACGTTGGAGGATCCAAAGTTACAACAGGATGTAAGAGGAGTGAGGATGGGAGGGACAGATAGGTTAACAAGAGACTTCCTAGGCGTTGGACAGATTGTAAGAAGCATGAGTGGCGGCGGCGGCGGCGGTTATTCACAGAAACAAGGGGCGGAGGGGATTGTTTTGGAGGGAAATGAGAGGAATTCAGCGCCGTCAAGTCAAGGTTTTGGCGGTGGAAATGGAAACTACCAGTGA 1665 47.63 MAASSSSSLPVYGVGEEASPQMRPPSSSSTKKKRNQPGTPSKYYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKDPKRKVYLCPEPTCVHHHPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESSRHPPSIGRHLYGAQENPNIINQSAPGHFTHLLPSSMGSSFRPMSASPPFFLTEQNNQSSFHEDQPNQSQQGFFGNKGFHGVMQFPDIQSHTNNCASNVFNLGFIPNSTSEGTTNLSNNNDTNTITTNLNQFSATNNANNQAAASNIFAVIGDQMNSAALPSLYSNASAVGGGGGSGIGGSFPHMSATALLQKAAQLGSTTSSTNTTSTLLRSFGSSSNSGGKASDRTLFPLSYGGVTFGEHESNLQDMMNSFGSGSSGSGMFGSGMNSFGGLECSSSRTNMETLEDPKLQQDVRGVRMGGTDRLTRDFLGVGQIVRSMSGGGGGGYSQKQGAEGIVLEGNERNSAPSSQGFGGGNGNYQ 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5199600 5202183 - Cp4.1LG01g07880.1 Cpe01g00883 462196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00883 554 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Cpe01g00883 554 Pfam Zinc-finger double-stranded RNA-binding 63 85 IPR022755 -
Cpe01g00883 554 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Cpe01g00883 554 Gene3D Classic Zinc Finger 45 111 - -
Cpe01g00883 554 Gene3D Classic Zinc Finger 113 196 - -
Cpe01g00883 554 MobiDBLite consensus disorder prediction 536 554 - -
Cpe01g00883 554 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Cpe01g00883 554 MobiDBLite consensus disorder prediction 1 46 - -
Cpe01g00883 554 SMART c2h2final6 139 159 IPR013087 -
Cpe01g00883 554 SMART c2h2final6 104 134 IPR013087 -
Cpe01g00883 554 SMART c2h2final6 63 85 IPR013087 -
Cpe01g00883 554 MobiDBLite consensus disorder prediction 21 37 - -
Cpe01g00883 554 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 8 516 - -
Cpe01g00883 554 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 516 - -
Cpe01g00883 554 MobiDBLite consensus disorder prediction 514 554 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00883 Cpe-Chr1:5199600 Cpe09g00622 Cpe-Chr9:4502966 0 dispersed
Cpe01g00883 Cpe-Chr1:5199600 Cpe03g00175 Cpe-Chr3:867681 2.44E-106 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48800 PF12171 zf-C2H2_jaz 3.40E-05 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00883 K25870 - csv:116401647 711.064