Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g00883 | ATGGCTGCATCTTCTTCTTCCTCACTTCCAGTTTATGGCGTTGGAGAAGAAGCATCTCCCCAGATGAGGCCTCCCTCTAGTTCTTCCACTAAGAAAAAAAGAAACCAACCAGGAACTCCAAGCAAGTATTACCCAGATGCGGAGGTCATAGCCTTGAGTCCCAAGACCCTAATGGCTACAAACAGATTCATTTGTGAAGTTTGTAACAAAGGGTTTCAAAGAGAGCAAAACCTTCAGCTTCATAGACGTGGTCACAACTTGCCTTGGAAGCTAAAGCAGAAGTCCACTAAAGACCCTAAGCGCAAGGTTTACTTATGTCCTGAACCCACATGTGTCCACCACCACCCTTCTAGGGCCCTTGGTGACTTAACCGGCATCAAAAAACACTACTCTAGAAAACATGGCGAGAAGAAATGGAAGTGTGATAAGTGCTCTAAGCGTTACGCCGTTCAGTCCGACTGGAAAGCTCACTCCAAAACGTGCGGTACTCGCGAGTATCGTTGCGATTGTGGCACTCTCTTCTCCAGACGGGATAGTTTTATTACTCATCGAGCTTTTTGTGATGCATTGGCTCAAGAAAGTTCTAGGCATCCTCCAAGTATTGGAAGGCATTTATATGGAGCTCAAGAGAATCCCAATATCATTAATCAATCTGCTCCTGGACATTTTACTCATCTCCTTCCTTCATCCATGGGGTCGTCCTTTCGGCCCATGTCGGCGTCACCGCCGTTCTTCTTGACGGAGCAGAATAATCAGAGTAGCTTCCATGAGGATCAGCCAAACCAATCCCAACAAGGGTTCTTTGGAAACAAGGGGTTTCATGGGGTGATGCAATTCCCTGATATCCAATCCCATACCAATAATTGTGCTTCCAATGTCTTCAATTTGGGGTTCATACCAAATTCTACTAGCGAGGGTACTACCAATTTGAGCAATAACAATGACACCAACACTATTACTACCAATTTGAATCAATTCAGTGCCACAAACAATGCCAACAATCAAGCTGCTGCCTCTAACATTTTCGCCGTAATCGGCGATCAGATGAATTCAGCTGCACTCCCATCTCTCTACAGCAATGCCTCGGCTGTCGGTGGTGGAGGCGGTAGTGGTATCGGTGGTTCGTTCCCACATATGTCGGCGACAGCGCTTCTTCAGAAGGCAGCTCAATTGGGTTCAACGACGTCAAGTACCAACACGACATCGACGTTGCTAAGGTCGTTTGGAAGCTCCTCGAACTCAGGGGGGAAAGCGTCAGACAGAACGCTTTTCCCATTGAGTTACGGAGGAGTAACATTCGGGGAACATGAGAGCAATCTTCAGGATATGATGAATTCATTTGGAAGCGGGAGCTCGGGAAGTGGGATGTTCGGGAGCGGGATGAACTCGTTCGGTGGATTGGAGTGCAGTAGTAGTAGAACCAACATGGAAACGTTGGAGGATCCAAAGTTACAACAGGATGTAAGAGGAGTGAGGATGGGAGGGACAGATAGGTTAACAAGAGACTTCCTAGGCGTTGGACAGATTGTAAGAAGCATGAGTGGCGGCGGCGGCGGCGGTTATTCACAGAAACAAGGGGCGGAGGGGATTGTTTTGGAGGGAAATGAGAGGAATTCAGCGCCGTCAAGTCAAGGTTTTGGCGGTGGAAATGGAAACTACCAGTGA | 1665 | 47.63 | MAASSSSSLPVYGVGEEASPQMRPPSSSSTKKKRNQPGTPSKYYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKDPKRKVYLCPEPTCVHHHPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESSRHPPSIGRHLYGAQENPNIINQSAPGHFTHLLPSSMGSSFRPMSASPPFFLTEQNNQSSFHEDQPNQSQQGFFGNKGFHGVMQFPDIQSHTNNCASNVFNLGFIPNSTSEGTTNLSNNNDTNTITTNLNQFSATNNANNQAAASNIFAVIGDQMNSAALPSLYSNASAVGGGGGSGIGGSFPHMSATALLQKAAQLGSTTSSTNTTSTLLRSFGSSSNSGGKASDRTLFPLSYGGVTFGEHESNLQDMMNSFGSGSSGSGMFGSGMNSFGGLECSSSRTNMETLEDPKLQQDVRGVRMGGTDRLTRDFLGVGQIVRSMSGGGGGGYSQKQGAEGIVLEGNERNSAPSSQGFGGGNGNYQ | 554 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5199600 | 5202183 | - | Cp4.1LG01g07880.1 | Cpe01g00883 | 462196 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g00883 | 554 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 65 | 85 | IPR013087 | - | |
Cpe01g00883 | 554 | Pfam | Zinc-finger double-stranded RNA-binding | 63 | 85 | IPR022755 | - | |
Cpe01g00883 | 554 | SUPERFAMILY | beta-beta-alpha zinc fingers | 62 | 159 | IPR036236 | - | |
Cpe01g00883 | 554 | Gene3D | Classic Zinc Finger | 45 | 111 | - | - | |
Cpe01g00883 | 554 | Gene3D | Classic Zinc Finger | 113 | 196 | - | - | |
Cpe01g00883 | 554 | MobiDBLite | consensus disorder prediction | 536 | 554 | - | - | |
Cpe01g00883 | 554 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 63 | 85 | IPR013087 | - | |
Cpe01g00883 | 554 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Cpe01g00883 | 554 | SMART | c2h2final6 | 139 | 159 | IPR013087 | - | |
Cpe01g00883 | 554 | SMART | c2h2final6 | 104 | 134 | IPR013087 | - | |
Cpe01g00883 | 554 | SMART | c2h2final6 | 63 | 85 | IPR013087 | - | |
Cpe01g00883 | 554 | MobiDBLite | consensus disorder prediction | 21 | 37 | - | - | |
Cpe01g00883 | 554 | PANTHER | ZINC FINGER PROTEIN, PUTATIVE-RELATED | 8 | 516 | - | - | |
Cpe01g00883 | 554 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 8 | 516 | - | - | |
Cpe01g00883 | 554 | MobiDBLite | consensus disorder prediction | 514 | 554 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00883 | Cpe-Chr1:5199600 | Cpe09g00622 | Cpe-Chr9:4502966 | 0 | dispersed | |
Cpe01g00883 | Cpe-Chr1:5199600 | Cpe03g00175 | Cpe-Chr3:867681 | 2.44E-106 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48800 | PF12171 | zf-C2H2_jaz | 3.40E-05 | CL0361 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g00883 | K25870 | - | csv:116401647 | 711.064 |