Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00886 ATGTCGCGGAAGGGTTTGATGGAACAAGACTTGAAGAAATTGGATGTGACAAAGCTCCATCCACTTTCTCCTGAAGTTATATCTCGTCAGGCTACAATTAATATTGGTACTATTGGTCACGTGGCACATGGGAAGTCCACCGTTGTAAAAGCAATTTCAGGAGTCCAGACTGTACGTTTTAAGAATGAGCTGGAGCGTAACATTACCATTAAGCTGGGGTATGCCAATGCAAAGATATACAAATGTGAAGATGACAAGTGCCCTCGGCCTATGAGCTACAAGGCGTATGGAAGTGGAAAGGAAGACAGTCCTTTATGTGATGTGCCTGGATTTGAAAATTGCAGAATGAAACTATTGCGACATGTATCCTTTGTCGACTGCCCGGGTCATGATATTCTTATGGCTACCATGCTTAACGGAGCAGCTATTATGGATGGAGCATTACTTCTGATTGCTGCCAATGAAAGCTGCCCTCAACCTCAAACTTCTGAGCACCTTGCTGCTGTTGAAATTATGCGCCTTCAACATATTATAATCCTCCAGAATAAAGTTGATCTTATTCAGGAAAATGTGGCAATCAATCAACATGAAGCTATTCAAAAATTTATTCAGGGAACCGTTGCTGATGGTGCACCAGTAGTGCCAATTTCTGCTCAGCTCAAGTATAATATTGATGTTGTTTGCGAGTATATAGTGAAAAAAATTCCAATTCCAGAAAGGAACTTTGTCTCACCTCCTAATATGATCGTGATTCGTTCTTTTGATGTCAACAAACCCGGATTTGAAGTTGATGAGATCAAAGGTGGTGTGGCTGGTGGTAGCATATTACGGGGTGTTTTAAAGGTGAATCAATTTATTGAAGTTCGTCCGGGGATTGTTGTTAAGGATGAAAGTGGTAATATCAAGTGCACTCCAATATACTCAAGGATTGTTTCATTGTATGCGGAGCAAAATGAGCTGCAATTTGCAGTCCCTGGAGGTCTCATTGGGGTTGGCACAACTATGGATCCCACTTTGACTCGTGCTGACAGATTGGTCGGTCAGGTTCTTGGGGAAGTTGGTTCACTTCCTGATGTTTTTGTTGAGCTAGAGGTAAACTTTTTCCTTTTGCGGCGGCTCCTGGGTGTCAGGACAAAAGGATCAGAAAGGCAGGGAAAAGTATCAAAGCTAGCCAAGGGGGAGATTCTAATGTTGAACATAGGATCCATGTCTACGGGTGCTAGAGTACTTGCAGTAAAGAACGATTTAGCAAAACTGCAGCTTACTTCCCCTGTTTGCACCAGCAAGGGGGAGAAGATTGCTCTAAGTCGTCGGGTCGAGAAGCACTGGCGTCTTATTGGCTGGGGTCAAATTCAAGCTGGAAGTACTCTCGACGTCCCTCCCTGCCCCATTTGA 1395 43.58 MSRKGLMEQDLKKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDKCPRPMSYKAYGSGKEDSPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPDVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGSTLDVPPCPI 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5222481 5227897 - Cp4.1LG01g07960.1 Cpe01g00886 462199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00886 464 Pfam Elongation factor Tu GTP binding domain 32 236 IPR000795 GO:0003924|GO:0005525
Cpe01g00886 464 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 30 239 IPR000795 GO:0003924|GO:0005525
Cpe01g00886 464 CDD eIF2_gamma_II 241 354 IPR044127 GO:0000049
Cpe01g00886 464 Gene3D - 30 240 IPR027417 -
Cpe01g00886 464 Gene3D Translation factors 242 356 - -
Cpe01g00886 464 Gene3D Translation factors 357 456 - -
Cpe01g00886 464 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 1 463 - -
Cpe01g00886 464 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 355 452 IPR009001 -
Cpe01g00886 464 Pfam Initiation factor eIF2 gamma, C terminal 362 451 IPR015256 -
Cpe01g00886 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 242 IPR027417 -
Cpe01g00886 464 PRINTS GTP-binding elongation factor signature 34 47 IPR000795 GO:0003924|GO:0005525
Cpe01g00886 464 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924|GO:0005525
Cpe01g00886 464 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924|GO:0005525
Cpe01g00886 464 PRINTS GTP-binding elongation factor signature 177 186 IPR000795 GO:0003924|GO:0005525
Cpe01g00886 464 CDD eIF2_gamma 33 240 IPR044128 GO:0005525
Cpe01g00886 464 Pfam Elongation factor Tu domain 2 268 350 IPR004161 GO:0005525
Cpe01g00886 464 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 463 - -
Cpe01g00886 464 CDD eIF2_gamma_III 357 451 IPR015256 -
Cpe01g00886 464 SUPERFAMILY Translation proteins 240 354 IPR009000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00886 Cpe-Chr1:5222481 Cpe12g01006 Cpe-Chr12:8430408 2.25E-15 dispersed
Cpe01g00009 Cpe-Chr1:49972 Cpe01g00886 Cpe-Chr1:5222481 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00886 K03242 - csv:116403970 907.516