Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00897 ATGAAACTGATGGTAATGAGGTACTCTCCATTCTTCTTCGTCTTGTTGTTCTGTGTACTGCCTCTGGTTCGGGCTGGAGATGAAGAAGCTCTGTTAGCACTGAAAGATTCTCTCGACCCTGGGAACTCGCTTCCATGGCGAGGAAGCTCTGTGTGCCACTGGCAAGGCGTGAAAGAGTGCAAGAATGGGCGGGTAACTAAGCTTGTTTTGGAGCATCTAAATCTCTCTGGCGTTCTTAACCACAAGATTTTGAATCGTTTAGATCAGCTTCGTGTTCTCAGTTTCAAAGGAAATTCACTCTCTGGCCGAATCCCTGATCTCTCAGGTCTTGTTAATCTCAAATCCCTCTATCTTAACGACAACAACTTTTCCGGCGAGTTCCCGAGCTCCATCTCCGATCTCCATCGCTTGAAGGTCGTTGTTCTTTCCGGTAATCAAATATCTGGCCCCATTCCAGACTCGCTGCTCAAACTCCGGCGTCTCTATGTCCTACACCTGCAGGACAACCAACTCACCGGCTCCATCCCACCTTTCAACCAAACCAGTCTCCGATTCTTCAATGTCTCTAACAATCACCTCTCCGGCGACATCCCAGAAACCCCCGCCTTGCTCCGCTTCAATGTCTCGTCATTTTCCGGCAACCTGGAACTTTGCGGAAAACAAGTTCAAAACCCCTGTGGAAATATTGCCATTGCGCCATCATTAAGTCCCTCTTATTCACAAATCCTGAGCTCAAGCTCGTCTTCAAGACACAAAAAAATGGTCAGGATAATAGCAGGAAGCGTTGGTGGGTTTGTCGGGCTGCTATTAATCATTCTTTTATTGTGTATGATTTGCAAATGTAGGGAAAGAGAGAGCCTAGCGGAAGTTAGAAACAAAGGAATCGGCGACGAGGGGATGGGGATGGGGATGGAGGAAACATCTGGAACTGCCAGCGGGAGCAGAGAAGTTAATAACGGTGGGAAGCAAGGGGGATTTTCATGGGAAAGTGAAGGACTAGGGAGTCTAGTGTTCTGCGGAGCAGGGGATCAGAAAATGACTTATAGCTTGGAAGATCTGTTGAAAGCTTCGGCGGAGACTTTGGGCAGAGGGACCATCGGAAGCACATACAAGGCAGTGATGGAATCTGGGTATATTGTGACGGTGAAGCGGCTGAAGGATGCAAGGTACCCACGAGCCGAGGAATTCGGACGGCAGATGGAAGTTCTTGGGCGGCTCAGACACCCCAACTTGGTCCCTCTCAGGGCCTATTTCCAGGCTAAGGAGGAACGCCTTCTCGTATACGATTATTTCCCCAATGGCAGTCTCTTCTCTCTCATCCACGGATCGAGAACTTCAGGCGGAGGAAAGCCTCTTCATTGGACATCCTGCCTCAAAATAGCCGAAGACTTGGCCAGTGGTCTACTCTACATCCACCAGAACCCAGGCTCAATACATGGAAACCTCAAATCCTCAAACGTACTATTAGGATCGGATTTCGAGTCGTGTCTTACTGATTATGGTCTTAACTTATTCCGAGATCCAGATTCGCTCGAAGAACCTAGTGCAACTTCGCTCTTTTACCGTGCTCCCGAATGCCGCGACATCCGTAAGCCAACCACACAACAAGCAGACGTCTATAGTTTTGGTGTTCTTCTGTTGGAGCTTCTTACAGGAAAAACACCCTTCCAAGATCTTGTTCAAGAACATGGCTCCGACATTCCCAAGTGGGTTAGCTCAGTTAGAGAAGAGGAGACGGAGTCTGGGGATGATCCCACGTCTGGTAATGAGGCATCGGAAGAGAAACTTCAAGCTCTTTTGAACATAGCAATGGCTTGTGTTTCACTTATGCCGCAGAACCGACCTACAATGAGGGATGTACTAAAGATGATAAGAGATACAAGAGCAGAGGCTCAAATATCATCCAACAGTAGTGATCATTCACCAGGGAGATGGTCTGATATTGTCCAAAGTTTGCCCAGGGAAGAACATTTAAGCATTTGA 1983 48.01 MKLMVMRYSPFFFVLLFCVLPLVRAGDEEALLALKDSLDPGNSLPWRGSSVCHWQGVKECKNGRVTKLVLEHLNLSGVLNHKILNRLDQLRVLSFKGNSLSGRIPDLSGLVNLKSLYLNDNNFSGEFPSSISDLHRLKVVVLSGNQISGPIPDSLLKLRRLYVLHLQDNQLTGSIPPFNQTSLRFFNVSNNHLSGDIPETPALLRFNVSSFSGNLELCGKQVQNPCGNIAIAPSLSPSYSQILSSSSSSRHKKMVRIIAGSVGGFVGLLLIILLLCMICKCRERESLAEVRNKGIGDEGMGMGMEETSGTASGSREVNNGGKQGGFSWESEGLGSLVFCGAGDQKMTYSLEDLLKASAETLGRGTIGSTYKAVMESGYIVTVKRLKDARYPRAEEFGRQMEVLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSRTSGGGKPLHWTSCLKIAEDLASGLLYIHQNPGSIHGNLKSSNVLLGSDFESCLTDYGLNLFRDPDSLEEPSATSLFYRAPECRDIRKPTTQQADVYSFGVLLLELLTGKTPFQDLVQEHGSDIPKWVSSVREEETESGDDPTSGNEASEEKLQALLNIAMACVSLMPQNRPTMRDVLKMIRDTRAEAQISSNSSDHSPGRWSDIVQSLPREEHLSI 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5271688 5277464 + Cp4.1LG01g07780.1 Cpe01g00897 462210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00897 660 MobiDBLite consensus disorder prediction 298 317 - -
Cpe01g00897 660 Pfam Leucine rich repeat 112 171 IPR001611 GO:0005515
Cpe01g00897 660 ProSiteProfiles Protein kinase domain profile. 355 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00897 660 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 650 - -
Cpe01g00897 660 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 11 650 - -
Cpe01g00897 660 SUPERFAMILY L domain-like 30 215 - -
Cpe01g00897 660 Gene3D Phosphorylase Kinase; domain 1 338 430 - -
Cpe01g00897 660 Gene3D Ribonuclease Inhibitor 25 179 IPR032675 -
Cpe01g00897 660 Pfam Leucine rich repeat N-terminal domain 26 57 IPR013210 -
Cpe01g00897 660 Gene3D Transferase(Phosphotransferase) domain 1 431 646 - -
Cpe01g00897 660 MobiDBLite consensus disorder prediction 570 591 - -
Cpe01g00897 660 Pfam Protein kinase domain 358 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00897 660 SUPERFAMILY Protein kinase-like (PK-like) 359 633 IPR011009 -
Cpe01g00897 660 Gene3D Ribonuclease Inhibitor 180 228 IPR032675 -
Cpe01g00897 660 MobiDBLite consensus disorder prediction 631 660 - -
Cpe01g00897 660 MobiDBLite consensus disorder prediction 631 645 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00029 Cpe-Chr1:206335 Cpe01g00897 Cpe-Chr1:5271688 4.14E-43 dispersed
Cpe01g00897 Cpe-Chr1:5271688 Cpe10g00446 Cpe-Chr10:2605039 1.75E-156 dispersed
Cpe01g00897 Cpe-Chr1:5271688 Cpe19g00633 Cpe-Chr19:5138221 2.17E-158 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62135 PF00069 Pkinase 5.40E-36 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00897 - - csv:101209119 1142.1