Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00910 ATGGCCGGGATTTTCGCCGGCGGTAGCGACTGTCCACCGGCTTCGGCTTTACTGGATTTTGTTCGCGATGTCGTTCGAATGTCGGCGGGGACGGGCAGTGGAGGGGTTTTCAAGAAGGATTGTACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAGATCAGAGACTTCAATGGCGTCAAATTTCGACATGTTGGTGCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTGGCGCTGTTACCGTGAGGGATTCGTCTCCGTCTTCGTGGCTATGTGATTTAGTGGCGGCGTTGAAGGATACTGAGCGTCTCATTTTTGCTGCTTCGACTTTCCGGTCCTGCGGTTCTTCTTCTGAAGAAGTTGCCAATAAGATAATCTTTCAGTTCCAATGCGTGACATGGAAGTTAGAGAAGGCATTGAGCAATCTTCCTTATGATCGCCTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAGTTGAGAAGAGCAGCTAGAAAATATGGGTCTCTGACTGCAATTCCGCCATCAGTTGTTCAATCTCAGTTGCTGAAGAAAAATGTGGACCTGTTAAATCTGAACAACTGTGTTGATAACTTTCATGTTGAGGAGAATGGTATCGTTGATCATGAGATTACAGTGAAATTTGATGCCTTTCCAAATTGTAGAGGGTTGATGAATAGGGGTGTGGATCAGATTGAGAAACTTCCATCCTCCTCAGAGGGTTGTTCTGATGGACAGAATGACTCTGCCAAAAAGAGTGGAGACCAGGTGAAGAACCCAGACGCGGTTCCAATCCCTGATGATTTTTTATGCCCCATATCCCTGGAAATCATGAGGGATCCTGTTATTGTGTCCACAGGCCAGACGTATGAGAGATCTTATGTACAGAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAGCTCCAAAATTTGATTCTCACCCCAAATTATGTGCTACGAAGTCTTATTAGTCAATGGTGTGTTAACCACAATATTGAGCAACCTACAGGACTAACCAATGGGAAGATCAAAAAGTGTGATGGATCGTACCGTGACGTGTGCGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAACTAACAAGCCATTCAATTGAGGAGCAGAGAGCATCTGTGACCGAACTTCGATCTCTATCGAAAAGAAGCACGGATAATAGAATACTGATTGCCGAAGCAGGAGCAATTCCTGCTTTGGTCAATCTATTAACTGTTGGTGATGTTTTAATACAAGAAAATGCAGTTACTTCCATTCTGAACCTTTCAATATATGAGAACAACAAGGGACTCATTATGCTTGCTGGTGCCATACCTTCCATTGTCCAAGTTCTGAGAGTTGGAAGTATGGAAGCGAGAGAAAATGCAGCAGCCACACTTTTTAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGATTCTGGGGCCATTCCGGCTCTTGTGAATTTACTTGAAAATGGAAGCTCAAGAGGGAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGTATTTATCAGGGTAACAAGGGAAGGTCTGTGAGGGCAGGGATCATTCCAGCTCTATTAAAGATGCTTACGGACTCGGTTAACTCCATGGTCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAAGCCAGTACCATACCTGTTCTAATAGACCTGCTGAGGACCGGATTGCCTCGCAACAAAGAAAACGCTGCTGCAATTTTGCTTGCTTTGTGTAAGAGAGATACAGAAAATCTTTCCTGCATGAGTAGGCTGGGTGCCGTGATTCCACTGACCGAGCTCGCCAAGAGTGGCACAGAAAGAGCAAAGAGGAAGGCTATTTCACTGTTGGAGCATCTTCGAACGCTGCAGCAGCAGATATAG 1971 45.1 MAGIFAGGSDCPPASALLDFVRDVVRMSAGTGSGGVFKKDCTDLVRRIVLLTHLFEEIRDFNGVKFRHVGASSSSSSSSSSSCGAVTVRDSSPSSWLCDLVAALKDTERLIFAASTFRSCGSSSEEVANKIIFQFQCVTWKLEKALSNLPYDRLDISEEVQEQVELVRAQLRRAARKYGSLTAIPPSVVQSQLLKKNVDLLNLNNCVDNFHVEENGIVDHEITVKFDAFPNCRGLMNRGVDQIEKLPSSSEGCSDGQNDSAKKSGDQVKNPDAVPIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLILTPNYVLRSLISQWCVNHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIEEQRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTVGDVLIQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGDSGAIPALVNLLENGSSRGKKDAATALFNLCIYQGNKGRSVRAGIIPALLKMLTDSVNSMVDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTENLSCMSRLGAVIPLTELAKSGTERAKRKAISLLEHLRTLQQQI 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5374541 5378168 + Cp4.1LG01g07650.1 Cpe01g00910 462223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00910 656 Pfam Armadillo/beta-catenin-like repeat 406 444 IPR000225 GO:0005515
Cpe01g00910 656 Pfam Armadillo/beta-catenin-like repeat 488 526 IPR000225 GO:0005515
Cpe01g00910 656 MobiDBLite consensus disorder prediction 71 91 - -
Cpe01g00910 656 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 20 651 - -
Cpe01g00910 656 Gene3D - 358 456 IPR011989 -
Cpe01g00910 656 SUPERFAMILY ARM repeat 366 649 IPR016024 -
Cpe01g00910 656 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
Cpe01g00910 656 PANTHER U BOX DOMAIN-CONTAINING 20 651 - -
Cpe01g00910 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 498 525 IPR000225 GO:0005515
Cpe01g00910 656 MobiDBLite consensus disorder prediction 246 274 - -
Cpe01g00910 656 Pfam U-box domain 276 347 IPR003613 GO:0004842|GO:0016567
Cpe01g00910 656 Gene3D - 551 655 IPR011989 -
Cpe01g00910 656 SUPERFAMILY RING/U-box 271 349 - -
Cpe01g00910 656 MobiDBLite consensus disorder prediction 246 264 - -
Cpe01g00910 656 CDD RING-Ubox_PUB 280 322 IPR045210 -
Cpe01g00910 656 SMART arm_5 405 445 IPR000225 GO:0005515
Cpe01g00910 656 SMART arm_5 569 609 IPR000225 GO:0005515
Cpe01g00910 656 SMART arm_5 528 568 IPR000225 GO:0005515
Cpe01g00910 656 SMART arm_5 611 651 IPR000225 GO:0005515
Cpe01g00910 656 SMART arm_5 446 486 IPR000225 GO:0005515
Cpe01g00910 656 SMART arm_5 487 527 IPR000225 GO:0005515
Cpe01g00910 656 Gene3D - 457 550 IPR011989 -
Cpe01g00910 656 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 349 IPR013083 -
Cpe01g00910 656 Coils Coil 157 177 - -
Cpe01g00910 656 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Cpe01g00910 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 457 499 IPR000225 GO:0005515
Cpe01g00910 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 458 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00910 Cpe-Chr1:5374541 Cpe02g01239 Cpe-Chr2:11139117 1.70E-164 dispersed
Cpe01g02363 Cpe-Chr1:19763882 Cpe01g00910 Cpe-Chr1:5374541 6.84E-40 dispersed
Cpe09g01045 Cpe-Chr9:9139986 Cpe01g00910 Cpe-Chr1:5374541 6.45E-13 dispersed
Cpe19g00930 Cpe-Chr19:6686208 Cpe01g00910 Cpe-Chr1:5374541 3.73E-11 dispersed
Cpe19g01064 Cpe-Chr19:7296451 Cpe01g00910 Cpe-Chr1:5374541 6.59E-16 dispersed
Cpe20g00225 Cpe-Chr20:1295346 Cpe01g00910 Cpe-Chr1:5374541 1.74E-14 dispersed
Cpe13g00377 Cpe-Chr13:4077679 Cpe01g00910 Cpe-Chr1:5374541 2.10E-175 transposed
Cpe01g00039 Cpe-Chr1:266562 Cpe01g00910 Cpe-Chr1:5374541 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00910 - - csv:101221534 1105.12