Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00925 ATGACGAAGTCCAAGAGTATGTTACACAACCTCATGAGACCATTCAGATTCGGTTCATCAAGAGATAGCCAGGGCGAGGACGATTTGGAGCAGATTGCAGCTAATGAACAGAAGTTTTTTCGGTTCGAAACCTTAGTTGAAGCTACCAACAATTTCCACCCCACGAACAAGCTTGGCCAAGGCGGATTTGGTCCAGTTTTCAAGGGGAAGTTGAAGGATGGAAGAGTGATTGCAGTTAAGAAGTTGTCGCAATATTCAAAACAAGGAAAAAAAGAGTTTATGACTGAGGCCAAATTGTTGGCTCGTGTGCAGCACAGAAATGTTGTCAATTTGTTGGGGTACTGTGTGCATGGTTCAGAAAAATTACTGGTTTACGAATACGTCACGAATGAGAGCCTCGACAAGCTTCTCTTTAAAGCCAGCAGACGAGGAGAACTTGATTGGAAGATGAGGTATGGCATAATCTTTGGCGTAGCACGAGGGTTGCAATATCTTCATGTAGACTCACATAATGTCATTATCCATCGTGACATCAAGGCTGGTAACGTTTTGTTGGATGATAAATGGGTCCCTAAGATTGCGGATTTCGGTATGGCTCGTCTCTTCCCGGAAGATCAAACTCATGCTTACAAGCTTTACAAGAAAGGCAGGAGCTTGGAGATCATGGACTCAACTTTAGCATCATCAGCTGATCCTGACCAAGTTACAATGTGCATTCAGATAGGATTGCTTTGCACACAAGGCGATCCGCACCTACGGCCGACCATGCCACATGTAGTTTTGACCCTGTCGAGGAGACCTGGTACTTTGGAGGAACCAACAAGACCGGGAATGCCTGGTTCTCGATATAGAAGAACACGTAGGACAAGCGTATCGTCCTCCAATGCTGGAACTTCTGGTGCATCCGATTCCTATGCTTCGACGACCAATACTACTGGAACTATTACTGCAACGGCAACTGCAAATGAGATTGTTTCTGGTTCTTCTTCAGTTAGTCAAGGATACAATACTCGTGGGAAAACTATTACTGCAACCGAAAACGACATTGCTTCTGGTTCTTCTTCGGTTAGTCAAGGATACGATACTCGTGGGAAACGTCCCATGAAAGGTTAG 1113 44.83 MTKSKSMLHNLMRPFRFGSSRDSQGEDDLEQIAANEQKFFRFETLVEATNNFHPTNKLGQGGFGPVFKGKLKDGRVIAVKKLSQYSKQGKKEFMTEAKLLARVQHRNVVNLLGYCVHGSEKLLVYEYVTNESLDKLLFKASRRGELDWKMRYGIIFGVARGLQYLHVDSHNVIIHRDIKAGNVLLDDKWVPKIADFGMARLFPEDQTHAYKLYKKGRSLEIMDSTLASSADPDQVTMCIQIGLLCTQGDPHLRPTMPHVVLTLSRRPGTLEEPTRPGMPGSRYRRTRRTSVSSSNAGTSGASDSYASTTNTTGTITATATANEIVSGSSSVSQGYNTRGKTITATENDIASGSSSVSQGYDTRGKRPMKG 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5470474 5475919 - Cp4.1LG01g07440.1 Cpe01g00925 462238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00925 370 SMART serkin_6 52 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00925 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Cpe01g00925 370 Gene3D Transferase(Phosphotransferase) domain 1 128 210 - -
Cpe01g00925 370 MobiDBLite consensus disorder prediction 285 309 - -
Cpe01g00925 370 Gene3D Phosphorylase Kinase; domain 1 17 127 - -
Cpe01g00925 370 MobiDBLite consensus disorder prediction 342 370 - -
Cpe01g00925 370 ProSiteProfiles Protein kinase domain profile. 52 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00925 370 PANTHER RECEPTOR-LIKE KINASE 208 313 - -
Cpe01g00925 370 PANTHER RECEPTOR-LIKE KINASE 3 208 - -
Cpe01g00925 370 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 208 313 - -
Cpe01g00925 370 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 208 - -
Cpe01g00925 370 MobiDBLite consensus disorder prediction 342 361 - -
Cpe01g00925 370 SUPERFAMILY Protein kinase-like (PK-like) 35 263 IPR011009 -
Cpe01g00925 370 MobiDBLite consensus disorder prediction 263 309 - -
Cpe01g00925 370 Gene3D Transferase(Phosphotransferase) domain 1 211 273 - -
Cpe01g00925 370 Pfam Protein tyrosine and serine/threonine kinase 55 208 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00925 Cpe-Chr1:5470474 Cpe02g00656 Cpe-Chr2:4105404 3.58E-51 dispersed
Cpe01g00925 Cpe-Chr1:5470474 Cpe20g00398 Cpe-Chr20:2246374 3.25E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62137 PF07714 PK_Tyr_Ser-Thr 6.90E-35 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00925 - - cmax:111486649 524.628