Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00950 ATGGTTTCAAGGTCGTATTCCAATCTACTTGAACTCGCCACCGGAGAATCGCCGTCTTTCGGCCGTATGAACCGCCAAATCCCTCGTATTATGACTGTCGCCGGTTTAATCTCCGACATCGATGACGATCGACCAGAAAGCGTCTCATCGGAGCCGTCGTCCTCCTCCGCCCTTCGTGACCGGATTATCATTGTAGCCAATGAGCTCCCCATCAGAGCTCAGCGGAAATCAGGCGGCGGCTGGATTTTCAGCTGGGATGAAAATTCCCTTCTCCTGCAGCTGAAAGATGGGTTGGGTGATGATGATTTTGAGGTGTTTTATGTGGGTTGTCTCAAGGAAGATATTCAGGTAAATGAACAAGATGAGGTATCTCAAATACTCTTAGAAACATTTAAATGTGTACCAACGTTTCTGACTCAAGAGCTTTACACTAGTTACTATCATGGCTTCTGTAAGCAACAGCTATGGCCTCTGTTTCATTACATGTTGCCTCTGTCGCCTGACCTCGGCGGTCGGTTTAACCGACCGCTGTGGCAGGCTTATGTTTCTGTGAATAAGATCTTTGCTGATAGGATCATGGAAGTGATCAATCCTGAGGATGATTTTGTTTGGATTCATGATTATCATCTCATGGTGTTGCCTACTTTTCTTAGGAAGAGATTCAATAGAGTCAAGCTTGGATTCTTCCTGCATAGTCCGTTCCCATCGTCTGAGATATATCGAACGCTACCGATACGGGAGGAGCTCTTACGAGCGCTCCTGAATTCGGATTTGATAGGGTTTCATACATTTGATTATGCTAGGCATTTTCTTTCTTGTTGTAGTAGGATGCTTGGTCTAAGGTACGAGTCGAAACGGGGTTATATTGGGATAGAGTATTATGGTCGAACCATTAGTATTAAGATCCTTCCTGTTGGGATTCATATGGGTCAACTTCAATCTGTTTTGAGCCTTCAGAAGACAGAGGAGAAGGTTGCAGAGCTTATCGAACAGTTTCGTGATCGAGATAGGATAATGTTGCTCGGTGTTGACGATATGGACATATTTAAGGGTATTAGTTTGAAGCTTTTGGCTATGGAGCAGTTGTTGATCACACACCCTGAATGGCAGGGGAAAGTAGTATTGGTGCAGATTGCCAATCCTGCGAGAGGCCGAGGGAAAGATGTGAAAGAAGTTCAGGATGAGACGAAGGCAGCTGTTAAGCGGATTAACGACACGTTTGGGAAACCAGGGTACGAGCCAGTTATGTTGATTGAGGAGCCACTGAAATTCTATGAGAGAGTTGCATATTACACCGTTGCCGAATGTTGTTTGGTCACTGCGGTTCGGGACGGTATGAATCTCATTCCATATGAGTACATTGTCAGCCGCCAAGGGAACGATAAGTTAGATAAGCTCTTGGGGTGTGAATCATCAGCTCTGAAGAAGAGTATGTTGGTTATATCTGAATTCATTGGGTGCTCTCCGTCCTTAAGCGGAGCAATTCGAGTTAATCCGTGGAATATTGATGCTGTAGCTGATGCAATGGAATGTGCATTAGAGATGGAAGATGCCGAAAAGCAGCTCCGCCATGAGAAGCATTTTAGATATGTGAGCACGCACGATGTTGGGTATTGGGCTCGAAGTTTCCTACTAGATTTGGAGAGGGCTTGTCGGGATCATGTGAGGCAGAGATGTTGGGGTATCGGGTTCGGTTTAAGTTTTAGAGTTGTGGCTCTTGATCCGAACTTCAGGAAGCTAGCATTGGAACACATATTTTCGACTTATAAGAGGACGAAATCTCGAGCTATTCTTTTGGACTATGATGGTACATTAATGCCTCAAGCTTCAATTGATAAGAGTCCTACTTCAAAATGCCTCGAAACGCTTAATACCTTGTGTCGAGATAAGAACAATATGGTATTCATTGTGAGTGCAAAAAGCCGAAAGAAACTGGCCGAATGGTTCGGCCCTTGTGAAAATCTCGGCATTGCTGCCGAGCACGGGTACTTTATTAGGATGAAGCAGGATGAGGAATGGGAAACCAGTTTACCAGTTGCAGATTGCTATTGGAAGCAGATCGTGCAGCCGGTTATGAAACTCTACACCGAAACAACCGATGGTTCGACAATCGAAGATCGAGAAACTGCGCTTGGATGGTGTTACGAAGATGCAGATCCAGATTTTGGTTCGTGTCAAGCTAAGGAGCTCTTCGATCATCTCGAAAGTGTCCTAGCCAATGAACCAGTTACAGTCAAGAGTGGTCAAAATATTGTAGAAGTTAAACCACAGGGCGTTAGCAAGGGTCTTGTAGCTAAACGACTTCTCTCCGCAATGCAAGAGAAGGGGACCCCTGCAGATTTCGTTCTATGCATCGGTGATGACAGATCAGATGAAGACATGTTCAAGGTGATCTCGAGTTCCATGGAAGGCCCATCGATCTTGCCTCGAGCTGAAATTTTTGCATGTACGGTGGGGAGGAAACCGAGCAAAGCCAAGTATTACCTCGACGATCCATCAGAAATTGCAAGGTTGATGCACGGTTTGGCTACGGTGTCGAGGCAAAACGGCGCGCTTTATCCATCACAAGGTGCATAA 2577 45.44 MVSRSYSNLLELATGESPSFGRMNRQIPRIMTVAGLISDIDDDRPESVSSEPSSSSALRDRIIIVANELPIRAQRKSGGGWIFSWDENSLLLQLKDGLGDDDFEVFYVGCLKEDIQVNEQDEVSQILLETFKCVPTFLTQELYTSYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRPLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLRYESKRGYIGIEYYGRTISIKILPVGIHMGQLQSVLSLQKTEEKVAELIEQFRDRDRIMLLGVDDMDIFKGISLKLLAMEQLLITHPEWQGKVVLVQIANPARGRGKDVKEVQDETKAAVKRINDTFGKPGYEPVMLIEEPLKFYERVAYYTVAECCLVTAVRDGMNLIPYEYIVSRQGNDKLDKLLGCESSALKKSMLVISEFIGCSPSLSGAIRVNPWNIDAVADAMECALEMEDAEKQLRHEKHFRYVSTHDVGYWARSFLLDLERACRDHVRQRCWGIGFGLSFRVVALDPNFRKLALEHIFSTYKRTKSRAILLDYDGTLMPQASIDKSPTSKCLETLNTLCRDKNNMVFIVSAKSRKKLAEWFGPCENLGIAAEHGYFIRMKQDEEWETSLPVADCYWKQIVQPVMKLYTETTDGSTIEDRETALGWCYEDADPDFGSCQAKELFDHLESVLANEPVTVKSGQNIVEVKPQGVSKGLVAKRLLSAMQEKGTPADFVLCIGDDRSDEDMFKVISSSMEGPSILPRAEIFACTVGRKPSKAKYYLDDPSEIARLMHGLATVSRQNGALYPSQGA 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5627484 5631457 + Cp4.1LG01g07340.1 Cpe01g00950 462263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00950 858 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 1 849 - -
Cpe01g00950 858 Pfam Trehalose-phosphatase 598 833 IPR003337 GO:0003824|GO:0005992
Cpe01g00950 858 Gene3D - 724 852 IPR023214 -
Cpe01g00950 858 Gene3D - 594 712 IPR023214 -
Cpe01g00950 858 SUPERFAMILY HAD-like 595 842 IPR036412 -
Cpe01g00950 858 CDD HAD_TPP 596 834 - -
Cpe01g00950 858 Gene3D Glycogen Phosphorylase B; 54 314 - -
Cpe01g00950 858 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 597 798 IPR006379 -
Cpe01g00950 858 CDD GT20_TPS 61 548 IPR001830 GO:0003824|GO:0005992
Cpe01g00950 858 Gene3D Glycogen Phosphorylase B; 315 532 - -
Cpe01g00950 858 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 849 IPR001830 GO:0003824|GO:0005992
Cpe01g00950 858 Pfam Glycosyltransferase family 20 61 548 IPR001830 GO:0003824|GO:0005992
Cpe01g00950 858 TIGRFAM T6PP: trehalose-phosphatase 593 842 IPR003337 GO:0003824|GO:0005992
Cpe01g00950 858 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 552 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00950 Cpe-Chr1:5627484 Cpe15g00820 Cpe-Chr15:8155545 0 dispersed
Cpe09g00783 Cpe-Chr9:7260120 Cpe01g00950 Cpe-Chr1:5627484 1.03E-146 dispersed
Cpe14g00877 Cpe-Chr14:7238298 Cpe01g00950 Cpe-Chr1:5627484 5.03E-10 dispersed
Cpe08g00861 Cpe-Chr8:6802020 Cpe01g00950 Cpe-Chr1:5627484 0 transposed
Cpe14g00973 Cpe-Chr14:8231859 Cpe01g00950 Cpe-Chr1:5627484 0 transposed
Cpe01g00071 Cpe-Chr1:426969 Cpe01g00950 Cpe-Chr1:5627484 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00950 K16055 - vvi:100252552 1479.92