Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g00957 | ATGAGTATTGTTTTGAAAGGAGGGGGAAGGTCGAAGATCGAAGATCGAAGATTAGGGCTTTTGGTCACTTGGGTATCTCAGAAAATGGAGACATCGGCTTCTAATTCCGATCCTTACTCCAATTCTTCTTCACCCACAAGTGCTCGTACCTCCTCCAGATATGGGGTCTCGCTCCCTTCGCTGAATTTCTTCCGTTCGCCTTTGTCCGTCATCTTGGATTACTCTGGAATTCTTCCCACTAGGGCTGTTCGTCATGAATCGGAGCCTGTAATCAACGCCGCTTCCACTCCTGATTTGCGGGTTTATTCTCAAAATCAAAATCACTTAATGACCACTTCTTCGTCTTCTACTGCCTCAACCTCTTCCGGTAATACCGTCTCCTCTGGGGAGGTTTCGATTAGGATTATTGGGTCTGGTGAGCAAGATCCTTCTCCCAGTGTGTTGTTGCCGCCAAATCAGGCTCCGGTTGGACAAGCGGGTTATGAGCAAAATGCCAGGCTTCCTATTTCTGGGGATCAGCCGGAATCCCCTGACGAGGAACGAGTTCCTTTGGTGTCAACTTCTTCTTCATCTATTCAATCGGGAAGCAGTCGTGTCCATGCAGAATCTGGAAATGGCACGGAAGAGACTGCCAATAGAGATTCGTCATACCAGAGATATGATATTCAGCAGGTTGCCAGATGGATTGAACAGATTCTTCCATTCTCTTTGCTATTGCTTATAGTCTTTATCCGTCAGCATTTAGAAGGTTTTTTCATCACAATTTGGGTATCAGCTGTTCTGTATAAGTCGAACGATATTGTCAAGAAACAGACTGCTCTAAAGGTGGGGGAGAGGAAAATTTTTGTTCTTGCCGGTACTTCTATCGCATTTTTGGTTCATGTAATTGGGATTTACTGGTGGTGTCATAGTGATGATCTTCTGTCCCCGTTAGTCATGCTTCCACCAAAGACAGTTCCACCTTTTTGGCATGCCTTGTACATCATTTTGGTTAACGATACGATGGTGAGGCAGTTGGCAATGGCTTTCAAATGTCTTCTTCTTATCTACTACAAAAATGGCAGAGGCCATAACTTTCGCCGGCAGGGTCAAATTTTAACGCTTGTGGAATACTCTCTTCTGTTGTACCGTGCATTATTACCAGCACCCGTATGGTACCGGTTCTTCTTGAATAAAGATCAAGGGAGCCTCTTTTCATCACTGACAACAGGATTGTATTTAACCTTCAAGCTAACGTCTGTGGTTGAGAAGATTCAATCATTCGTTGCTGCATTTAAGGCTCTATCACAAAAAGAAGTAAATGCTGCGGGAGACCTCTGTGCTATCTGCCAGGAGAAGATGAATGCTCCAATCCTGTTACGTTGTAAGCACATCTTTTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAAAGAACTTGCCCTCTTTGCCGGGCACTCGTAAAGCCTGCAGAACTTCGAACATTCGGTGATGGGTCAACCAGCTTACTCTTCCAGTTGTTTTAG | 1506 | 44.62 | MSIVLKGGGRSKIEDRRLGLLVTWVSQKMETSASNSDPYSNSSSPTSARTSSRYGVSLPSLNFFRSPLSVILDYSGILPTRAVRHESEPVINAASTPDLRVYSQNQNHLMTTSSSSTASTSSGNTVSSGEVSIRIIGSGEQDPSPSVLLPPNQAPVGQAGYEQNARLPISGDQPESPDEERVPLVSTSSSSIQSGSSRVHAESGNGTEETANRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITIWVSAVLYKSNDIVKKQTALKVGERKIFVLAGTSIAFLVHVIGIYWWCHSDDLLSPLVMLPPKTVPPFWHALYIILVNDTMVRQLAMAFKCLLLIYYKNGRGHNFRRQGQILTLVEYSLLLYRALLPAPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSQKEVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF | 501 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5668922 | 5675515 | - | Cp4.1LG01g07150.1 | Cpe01g00957 | 462270 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g00957 | 501 | Pfam | Zinc finger, C3HC4 type (RING finger) | 438 | 481 | - | - | |
Cpe01g00957 | 501 | ProSiteProfiles | Zinc finger RING-type profile. | 440 | 478 | IPR001841 | - | |
Cpe01g00957 | 501 | MobiDBLite | consensus disorder prediction | 32 | 53 | - | - | |
Cpe01g00957 | 501 | SUPERFAMILY | RING/U-box | 432 | 483 | - | - | |
Cpe01g00957 | 501 | SMART | ring_2 | 440 | 477 | IPR001841 | - | |
Cpe01g00957 | 501 | MobiDBLite | consensus disorder prediction | 109 | 215 | - | - | |
Cpe01g00957 | 501 | MobiDBLite | consensus disorder prediction | 182 | 215 | - | - | |
Cpe01g00957 | 501 | MobiDBLite | consensus disorder prediction | 109 | 134 | - | - | |
Cpe01g00957 | 501 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 29 | 501 | IPR044235 | GO:0061630|GO:1904294 | |
Cpe01g00957 | 501 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 29 | 501 | - | - | |
Cpe01g00957 | 501 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 414 | 487 | IPR013083 | - | |
Cpe01g00957 | 501 | CDD | RING-HC_RNFT1_like | 439 | 478 | - | - | |
Cpe01g00957 | 501 | ProSitePatterns | Zinc finger RING-type signature. | 455 | 464 | IPR017907 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00957 | Cpe-Chr1:5668922 | Cpe19g00170 | Cpe-Chr19:1381119 | 1.25E-180 | dispersed | |
Cpe01g00078 | Cpe-Chr1:471537 | Cpe01g00957 | Cpe-Chr1:5668922 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g00957 | - | K22379 | csv:101207430 | 781.556 |