Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00957 ATGAGTATTGTTTTGAAAGGAGGGGGAAGGTCGAAGATCGAAGATCGAAGATTAGGGCTTTTGGTCACTTGGGTATCTCAGAAAATGGAGACATCGGCTTCTAATTCCGATCCTTACTCCAATTCTTCTTCACCCACAAGTGCTCGTACCTCCTCCAGATATGGGGTCTCGCTCCCTTCGCTGAATTTCTTCCGTTCGCCTTTGTCCGTCATCTTGGATTACTCTGGAATTCTTCCCACTAGGGCTGTTCGTCATGAATCGGAGCCTGTAATCAACGCCGCTTCCACTCCTGATTTGCGGGTTTATTCTCAAAATCAAAATCACTTAATGACCACTTCTTCGTCTTCTACTGCCTCAACCTCTTCCGGTAATACCGTCTCCTCTGGGGAGGTTTCGATTAGGATTATTGGGTCTGGTGAGCAAGATCCTTCTCCCAGTGTGTTGTTGCCGCCAAATCAGGCTCCGGTTGGACAAGCGGGTTATGAGCAAAATGCCAGGCTTCCTATTTCTGGGGATCAGCCGGAATCCCCTGACGAGGAACGAGTTCCTTTGGTGTCAACTTCTTCTTCATCTATTCAATCGGGAAGCAGTCGTGTCCATGCAGAATCTGGAAATGGCACGGAAGAGACTGCCAATAGAGATTCGTCATACCAGAGATATGATATTCAGCAGGTTGCCAGATGGATTGAACAGATTCTTCCATTCTCTTTGCTATTGCTTATAGTCTTTATCCGTCAGCATTTAGAAGGTTTTTTCATCACAATTTGGGTATCAGCTGTTCTGTATAAGTCGAACGATATTGTCAAGAAACAGACTGCTCTAAAGGTGGGGGAGAGGAAAATTTTTGTTCTTGCCGGTACTTCTATCGCATTTTTGGTTCATGTAATTGGGATTTACTGGTGGTGTCATAGTGATGATCTTCTGTCCCCGTTAGTCATGCTTCCACCAAAGACAGTTCCACCTTTTTGGCATGCCTTGTACATCATTTTGGTTAACGATACGATGGTGAGGCAGTTGGCAATGGCTTTCAAATGTCTTCTTCTTATCTACTACAAAAATGGCAGAGGCCATAACTTTCGCCGGCAGGGTCAAATTTTAACGCTTGTGGAATACTCTCTTCTGTTGTACCGTGCATTATTACCAGCACCCGTATGGTACCGGTTCTTCTTGAATAAAGATCAAGGGAGCCTCTTTTCATCACTGACAACAGGATTGTATTTAACCTTCAAGCTAACGTCTGTGGTTGAGAAGATTCAATCATTCGTTGCTGCATTTAAGGCTCTATCACAAAAAGAAGTAAATGCTGCGGGAGACCTCTGTGCTATCTGCCAGGAGAAGATGAATGCTCCAATCCTGTTACGTTGTAAGCACATCTTTTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAAAGAACTTGCCCTCTTTGCCGGGCACTCGTAAAGCCTGCAGAACTTCGAACATTCGGTGATGGGTCAACCAGCTTACTCTTCCAGTTGTTTTAG 1506 44.62 MSIVLKGGGRSKIEDRRLGLLVTWVSQKMETSASNSDPYSNSSSPTSARTSSRYGVSLPSLNFFRSPLSVILDYSGILPTRAVRHESEPVINAASTPDLRVYSQNQNHLMTTSSSSTASTSSGNTVSSGEVSIRIIGSGEQDPSPSVLLPPNQAPVGQAGYEQNARLPISGDQPESPDEERVPLVSTSSSSIQSGSSRVHAESGNGTEETANRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITIWVSAVLYKSNDIVKKQTALKVGERKIFVLAGTSIAFLVHVIGIYWWCHSDDLLSPLVMLPPKTVPPFWHALYIILVNDTMVRQLAMAFKCLLLIYYKNGRGHNFRRQGQILTLVEYSLLLYRALLPAPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSQKEVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5668922 5675515 - Cp4.1LG01g07150.1 Cpe01g00957 462270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00957 501 Pfam Zinc finger, C3HC4 type (RING finger) 438 481 - -
Cpe01g00957 501 ProSiteProfiles Zinc finger RING-type profile. 440 478 IPR001841 -
Cpe01g00957 501 MobiDBLite consensus disorder prediction 32 53 - -
Cpe01g00957 501 SUPERFAMILY RING/U-box 432 483 - -
Cpe01g00957 501 SMART ring_2 440 477 IPR001841 -
Cpe01g00957 501 MobiDBLite consensus disorder prediction 109 215 - -
Cpe01g00957 501 MobiDBLite consensus disorder prediction 182 215 - -
Cpe01g00957 501 MobiDBLite consensus disorder prediction 109 134 - -
Cpe01g00957 501 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 29 501 IPR044235 GO:0061630|GO:1904294
Cpe01g00957 501 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 29 501 - -
Cpe01g00957 501 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 414 487 IPR013083 -
Cpe01g00957 501 CDD RING-HC_RNFT1_like 439 478 - -
Cpe01g00957 501 ProSitePatterns Zinc finger RING-type signature. 455 464 IPR017907 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00957 Cpe-Chr1:5668922 Cpe19g00170 Cpe-Chr19:1381119 1.25E-180 dispersed
Cpe01g00078 Cpe-Chr1:471537 Cpe01g00957 Cpe-Chr1:5668922 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00957 - K22379 csv:101207430 781.556