Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00963 ATGCGAGGTTTGTTGAAGATGAAACGGCTTATTGAGCTCTTCGTCTTGTTCGTTTTGGCTCCACTCTGTGCTAGATGCATAAACCTACCTTTAAACGACGACGTTTTGGGCCTGATAGTGTTTAAAGCCGATGTTCAAGATCCGAAGCTGAAGCTCGCGACGTGGAACGAAGATGACGATAATCCCTGCAACTGGACTGGCGTCAAGTGCAGTCCCGGATCCAATCGGGTCGTCGAACTCAACCTCGATGGATTCTCTCTCTCGGGTCGACTCGGCCGCGGACTTTTCCAGTTGGAGTTTCTACAGAGATTGTCGCTCGCGAAGAACAATCTTAGTGGAAATATAAACCCCAATTTCTCTCGGGTCGGCAATCTTCAGGTGATTGATTTGAGTGGGAATAATTTCTCCGGTACTGTTCCGGATGAAGTTTTTAGTCAATGTGGGTCTCTGAGAGTCATCTCTTTGGCTAACAACAAATTTTCTGGGAAAATTCCTGATAGTTTGAGCTTGTGTGGGAGTCTTATTGCAGTTAACTTGTCGTCGAATCATTTTTCGGGTTCTTTGCCTTCTGGGATTTGGTCTTTTAGTGGGCTTCGATCTTTGGACTTGTCTGATAATGCTCTGGTGGGTGAAATTCCTAATGGAATTGAGAATTTGTATAATCTGCGGACTCTTAACTTGAGTAGGAATCGATTTTCTGGACAGATTCCTGATGGTATTGGGAACTGTTTGCTTCTGAGATCCATTGATCTTAGTGGGAATTCATTCTCTGGGAATCTTCCTCAGACAATGCAGAGACTTGTTTTGTGTGGTAATCTTATCTTAAGCAGGAATTTGTTGGAAGGAGATGTTCCAGAGTGGATAGGAGGAATGAAAAGCCTTGAAACTCTGGACTTTTCCGTGAACAATTTTACTGGCCGTATTCCTTCTACAATGGAAAATCTGCAATATCTAAAAGTATTGAATCTCTCTTCAAATGGCTTTACTGATAGCTTTCCGGAGTCTGTGATGAAATGCCAAAGCCTTTTGGCAATAGATTTCAGTCATAATTTGATCACGGGTAATCTTCCGGCAACTGGAAGTTTAGCCAAGCTGCAGTTTCTAAACCTGTCCGGGAATTCTTTTGTTGGTCCTATTCCAGAAACTATTGGAGATCTGAAATCTTTGAGCATTCTTGATTTGAGCTCGAATCGTCTGAACGAAACCATTCCTGATGCAATTGGAGGAGCTGTGTCCCTAATTGAGCTGAAGCTGGATGGGAATTTTCTAGGGGGTGAAATTCCCTCTTCAATTGGTCACTGTTCTTCCCTTACAAATCTGTTCATGTCACACAATAACTTAACTGGCCCGATACCAGCAGCATTAGCCAAACTCTCTTATCTACAAAATGTCGACTTATCTTTCAACAACCTCAATGGAACCCTTCCAAAGCAGTTGTCTAATCTTCCAAACCTTCATATGTTCAATATTTCTCATAACGACTTCAACAGTGAGCTGCCTACTGGTGGATTCTTTAACACCATCTCCCCTTCATCCGTTGCTGGCAATCCATCCCTTTGTGGCTCTGTTGTTAACAAGTCTTGCCCTTCCGTCCTTCCAAAACCTATTGTTCTTAATCCCAACTCCACTTCAGATTCCATTTCCAGCTCTCTGCCTCCAAGTAATAATCACAGAAGAAATAGAAATATCCTCAGCATTTCTGTGCTGATTGCCATTGGTGCCGCTGCTTTCATCATCATTGGTGTAATATCGATCACCATTCTCAACTTTCGAGTTCGATCACCCACGTCTTCTTCATCTGCAGCTGCACTTGCATTATCTATTGGGGACGATTTCAGTCATTCCTCCAGTCCTGACGCAAATTCTGGAAAGCTTGTGGTGTTATCAGGAGAGCTTGACTTTAGCACAGGTGCACATGCCCTGCTGAACAAGGATTGTGAACTTGGGCGTGGTGGATTTGGAGCAGTTTATCATACTGTTCTGCGGGATGGACACTCGGTTGCAATCAAGAAGCTTACGGTATCTAGCCTTGTTAAGTCGCAAGAGGATTTTGAGAGGGAAGTTAGGAAGTTTGGGATTGTCAGGCACCAAAATCTAGTGGCACTTGAAGGTTATTATTGGACTCCCTCGCTACAGCTCCTTATATACGAATTCGTCTCTGGAGGTAGCTTGTATAGGTTGCTCCACGAAGCATCAGACGACTATGTCCTGCCATGGAACGAGAGATTCGACATAATTCTTGGGACAGCGAAAGGTTTGGCTCACTTGCATCTATCAAACACAATCCACTATAACATAAAATCCAGCAACATTCTTATTGATTGTAATGGTCAACCGAAGGTTGGAGATTATGGTCTAGCTAGATTGCTGCCAATGCTAGACCGTTATGTTTTAAGTAGCAAGATCCAAAGCGCACTCGGTTACATGGCACCAGAGTTTGCTTGCAGGACAGTAAAGATAACCGAAAAATGCGATGTTTATGGCTTTGGAATATTGATTCTAGAGGTGGTTACAGGGAAGAGACCTGTCGAGTACATGGAAGACGACGTTGCAGTCCTCTGCGACATGGTCAGAGTAGCAGTGGAAGAAGGAAAAGCCGAAGAATGCATCGACAGCAAGCTGAGGGGGAATTTCCCTGTCGAAGAGGCCGTTCCCGTGTTAAAATTAGGCTTGATATGCACCTCCCATGTGCCATCAAACCGGCCGGACATGAGAGAAATGGTCAAAATATTGGAGATGATCAAATGCCCATCTGAATTACAAGAGGAGTTGGGATAA 2778 43.88 MRGLLKMKRLIELFVLFVLAPLCARCINLPLNDDVLGLIVFKADVQDPKLKLATWNEDDDNPCNWTGVKCSPGSNRVVELNLDGFSLSGRLGRGLFQLEFLQRLSLAKNNLSGNINPNFSRVGNLQVIDLSGNNFSGTVPDEVFSQCGSLRVISLANNKFSGKIPDSLSLCGSLIAVNLSSNHFSGSLPSGIWSFSGLRSLDLSDNALVGEIPNGIENLYNLRTLNLSRNRFSGQIPDGIGNCLLLRSIDLSGNSFSGNLPQTMQRLVLCGNLILSRNLLEGDVPEWIGGMKSLETLDFSVNNFTGRIPSTMENLQYLKVLNLSSNGFTDSFPESVMKCQSLLAIDFSHNLITGNLPATGSLAKLQFLNLSGNSFVGPIPETIGDLKSLSILDLSSNRLNETIPDAIGGAVSLIELKLDGNFLGGEIPSSIGHCSSLTNLFMSHNNLTGPIPAALAKLSYLQNVDLSFNNLNGTLPKQLSNLPNLHMFNISHNDFNSELPTGGFFNTISPSSVAGNPSLCGSVVNKSCPSVLPKPIVLNPNSTSDSISSSLPPSNNHRRNRNILSISVLIAIGAAAFIIIGVISITILNFRVRSPTSSSSAAALALSIGDDFSHSSSPDANSGKLVVLSGELDFSTGAHALLNKDCELGRGGFGAVYHTVLRDGHSVAIKKLTVSSLVKSQEDFEREVRKFGIVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYRLLHEASDDYVLPWNERFDIILGTAKGLAHLHLSNTIHYNIKSSNILIDCNGQPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILILEVVTGKRPVEYMEDDVAVLCDMVRVAVEEGKAEECIDSKLRGNFPVEEAVPVLKLGLICTSHVPSNRPDMREMVKILEMIKCPSELQEELG 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5707041 5711868 + Cp4.1LG01g07190.1 Cpe01g00963 462276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00963 925 ProSiteProfiles Protein kinase domain profile. 642 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00963 925 Pfam Protein tyrosine and serine/threonine kinase 644 910 IPR001245 GO:0004672|GO:0006468
Cpe01g00963 925 PRINTS Leucine-rich repeat signature 198 211 - -
Cpe01g00963 925 PRINTS Leucine-rich repeat signature 386 399 - -
Cpe01g00963 925 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 360 916 - -
Cpe01g00963 925 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 8 358 - -
Cpe01g00963 925 SUPERFAMILY L domain-like 32 266 - -
Cpe01g00963 925 SUPERFAMILY L domain-like 194 545 - -
Cpe01g00963 925 SMART LRR_typ_2 195 218 IPR003591 -
Cpe01g00963 925 SMART LRR_typ_2 219 243 IPR003591 -
Cpe01g00963 925 SMART LRR_typ_2 482 506 IPR003591 -
Cpe01g00963 925 SMART LRR_typ_2 386 410 IPR003591 -
Cpe01g00963 925 SMART LRR_typ_2 122 146 IPR003591 -
Cpe01g00963 925 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Cpe01g00963 925 Gene3D Phosphorylase Kinase; domain 1 631 718 - -
Cpe01g00963 925 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 358 - -
Cpe01g00963 925 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 360 916 - -
Cpe01g00963 925 Pfam Leucine rich repeat 317 374 IPR001611 GO:0005515
Cpe01g00963 925 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515
Cpe01g00963 925 Pfam Leucine rich repeat 436 495 IPR001611 GO:0005515
Cpe01g00963 925 Pfam Leucine rich repeat 197 255 IPR001611 GO:0005515
Cpe01g00963 925 Gene3D Ribonuclease Inhibitor 32 314 IPR032675 -
Cpe01g00963 925 Gene3D Transferase(Phosphotransferase) domain 1 719 923 - -
Cpe01g00963 925 SUPERFAMILY Protein kinase-like (PK-like) 646 912 IPR011009 -
Cpe01g00963 925 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524
Cpe01g00963 925 Gene3D Ribonuclease Inhibitor 315 532 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00084 Cpe01g00963 CCT
Cpe01g00963 Cpe13g01035 CCT
Cpe01g00084 Cpe01g00963 ECH
Cpe01g00963 Cpe13g01035 ECH
Cpe01g00963 Cpe01g00084 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00963 Cpe-Chr1:5707041 Cpe13g01035 Cpe-Chr13:8499842 0 dispersed
Cpe01g00084 Cpe-Chr1:504888 Cpe01g00963 Cpe-Chr1:5707041 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62138 PF07714 PK_Tyr_Ser-Thr 1.20E-38 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00963 - - csv:101217762 1582.77