Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00964 ATGTCCTCCGAAGACATGAATGGGCTCAACTCCCACCTCGTCTTCCAAGAGGATGCCATGCCCTTCAATTGCGCCACCACGTCGCAGCGCCGCGTCGCCGACCCAGCTCCCAAAACCCGCGAGCTCTGCGGTGGAACTCTGTTGGTCAAGGATGGCTTGGTTGGCTCTTCAGGCTGTAACACAGGAGCTACTCGGAACGACCCAAATGCGGTTACAATAGCAGAACCTGAAAATGCTTATTATTCCCAGTATTTGCAAGGCACTGAGGGATCTACTTCTGGGCAGAAGGATTTAGCTATAGAAAATGGATGTGGTTTTGGGAGAAGGGATGTTTCGTTTTCAAGCGAACCTGAAGAGTCTCTGAGAGCAATTCTCACCGACCCTGTGACGGGCGCTCTCATGGACGATGCAATGATATTGCCGTGTGGGCATTCCTTTGGGAGTGGTGGAATACAACATGTTCTTAGAGTAAAATCTTGTTACTCATGTTCTCAGTCAGTTTCTGAAGATTCTATTGCTCAAAACTTATCTCTACAAGCTGCAGTCCAAGCATTCCGCCGGGAAGAAGAACTGTTATTTTACCGCTCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGATAAAGGTGGTTATGGTGATTCAACTCTCATGGATACTCCACGAGGTCGTGGTGTTCAGTTTCCTTTTGCAGTGACAGATAGGGTGATTATCAAGGGGAACAAGAGGACGCCGCAGCGTTTTGTGGGACGTGAGGCTGTCGTTACAGCACAGTGCTTGAATGGATGGTATGTGGTGAAAACACTAGACAATGCAGAGAGTGTAAAGTTGCAGTACCGATCGCTTGCGAGGGTTCCAAATGATGCAGCATCGAAGACGATAACAAAGAAGGTTGCACCGAATTGGCTTTAG 909 48.73 MSSEDMNGLNSHLVFQEDAMPFNCATTSQRRVADPAPKTRELCGGTLLVKDGLVGSSGCNTGATRNDPNAVTIAEPENAYYSQYLQGTEGSTSGQKDLAIENGCGFGRRDVSFSSEPEESLRAILTDPVTGALMDDAMILPCGHSFGSGGIQHVLRVKSCYSCSQSVSEDSIAQNLSLQAAVQAFRREEELLFYRSPKRRRERFEQDKGGYGDSTLMDTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTAQCLNGWYVVKTLDNAESVKLQYRSLARVPNDAASKTITKKVAPNWL 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5713166 5716161 + Cp4.1LG01g07240.1 Cpe01g00964 462277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00964 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 191 IPR013083 -
Cpe01g00964 302 SUPERFAMILY RING/U-box 115 193 - -
Cpe01g00964 302 ProSiteProfiles U-box domain profile. 120 192 IPR003613 GO:0004842|GO:0016567
Cpe01g00964 302 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 60 302 - -
Cpe01g00964 302 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 60 302 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00018 Cpe-Chr1:113270 Cpe01g00964 Cpe-Chr1:5713166 1.95E-44 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00964 - - mcha:111015962 459.914