Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00966 ATGAGTTCATTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCTGCAACTTCTACTGCCAGCTCTAGTCCTTTTAATGTCTTTCTGCTCTATAGATCTTTTCAGATTATATGGTTGATTTCCATGAACTGGTTCATTAATGGTGGAGGTATGGAAGCTAAGACTGGTTTGCTTGGTGGGGGTGGGAAGATATGGCTCCAATTGTGGGAGAAGGTCATTGGGAACTGTTTCAAGATGCATCACCAGTACTACCAGTATATTGGATCCAAGAAAGTGAGAAAAACATGGTGGAGGAGGGTTTTGGTGGCCTGGGTTCTTAGCTCTGCTCTTGCTTCTTTATGGATCTTCCACTACATGAGCTCCCAAGCTACAGAAAAGAGGAAAGAGGCCTTGGGAAGCATGTGTGATGAGAGGGCTAGGATGCTTCAAGACCAGTTTAATGTCAGCATGAATCATATCCAGGCAATGTCTATCCTCATCTCCACCTTCCATCATGGCAAGAACGTATCTGCTATAGATCAGAGGACCTTTGCGAGGTACACAGAAAGAACTGCTTTTGAGAGGCCTCTTACCAGTGGTGTGGCGTATGCAGTAAGGGTGCTTCATTCTGAAAGAGAACATTTTGAGAAGCAACAGGGCTGGACAATTAAAAGGATGGACAAAATCGAACAAAGCCCAGTTCACGAAGATGACTATGCTCCAGAAGACCTGGAGCCATCACCCACCCAAGACGAATATGCTCCTGTAATCTTCGCACAGGATACAATTTCTCATGTCGTTTCTCTCGATATGCTGTCGGGAGTGGAAGACCGTAAGAATGTAATTCGTGCTAGAGCGTCAGGAAAGGGAGTCTTAACTGCTCCATTCAGGTTGATCAAAACAAATCGTCTAGGCGTCATACTTACATTTGCGGTCTACAAGAGAGATCTTCCCTCAAATGCCACTCCAAATGAGAGGATTCAAGCTACAGATGGGTATCTTGGGGGAGTTTTTGATATCGAGTCGCTGGTGGAGAAGTTACTTCAACAGCTTGCAAGCAACCAAACCATCTTAGTTAATGTTTATGATACCACTAACCAATCACATCCGATCAGTATGTATGGTGAAGATGTATCACAAGATGGGTTGCAGCATGTTAGTCCCCTCAACTTTGGGGATCCAGATAGGAAGCATGAGATGCGATGCAGATTCAAACAAAAACAAGCTTGGCCATGGTTAGCAATGACAACTTCAATTGGCATACTTATTATTGCATTGCTTTTGGGGTATATATTCCATGCAACCTTGAACCGAATTGCTAAAGTGGAGGATGATTATCATGAGATGATGGAACTCAAGAAACGGGCAGAAGATGCTGATGTTGCCAAATCCCAGTTTCTTGCAACTGTTTCCCATGAGATCAGAACCCCAATGAATGGTGTTCTAGGAATGTTGCATTTGCTAATGGACACAGACTTGGATGTGACTCAACAAGATTATGTTAAAACTGCACAAGATAGTGGAAAAGCTTTGGTATCATTGATAAACGAGGTTTTGGATCAGGCAAAAATTGAATCTGGAAAGCTTGAGCTTGAAGCAATACCATTTAATCTCCGAGCAATTTTGGATGATATTTTATCGCTCTTTTCTGGGAAATCTCAAGAAAAAGGACTGGAGCTGGCAGTTTACATCTCAGATAGTGTTCCTGCGATGCTTATTGGTGATCCTGGAAGGTTTAGGCAAATTATCACTAATCTCATAGGAAACTCAATCAAGGCAAAGAAAGGACACATCTTTGTCACTGTTAATCTCGTCGAGGAGGTTATTGAATCGATTGATCTCGAGATCGAGTCATCAACAAATAGCACCTTGAGTGGCTATCCTATTGCCAATAGACGTCTCAGCTGGGCAGGATTTCAAACGTTCAGTGAAGAGGGACCCGCTGCTTGTCATTTCATGCCATCTCCACCAGAGCTTATTAACCTCATGGTATCTGTGGAAGATACAGGCGTTGGTATTCCTCTGGAAGCCCAATCATGCGTTTTCACTCCCTTCATGCAGGTTCGACCATCCATCTCTAGAACGCATGGGGGAACGGGTATTGGGCTGAGTATTAGCAAATGTTTGGTTGGCCTCATGAAGGGGGAGATTGGTTTTGTGAGTGTACCTAAGATTGGCTCTACCTTCACATTCACGGCGGTATTCACAAAATGCTCTTCCAATTCAAGTGAATATAACAAAACCCAACAAATTAAGAACATTTCCATCCCAACATCCTCTGAATTTAAGGGTATGAGGGCACTAATTGTGGACCATCGACCTATTCGGGCCAAAGTATCAAGATATCATATTCAACGCCTTGGAATAAATGTTGAAGTCTTATCTGACTTGAATCAATGTCTGTGTTCCTCGACTATTAGTGGTTCAACTATCAATATGATTTTTGTTGAGCAAGATCTTTGGGATAAGGACACGAGCACATCTGATCTCTTTATCAAGAACTTGAGAAATTCTTATGGGGTTCCTCCCAAACTATTTCTTCTTACTTCCTCCATTAGTTCTTCAAAAGCTAGCACTACAGTTTCTGATGTATTCACTCCCACAGTCATCTTAAAGCCCTTGAGGTCAGGCATGCTCGCTGCCTCTCTTCACAGAGTCATGGGTGTAGGGATCAAGGGTAATCCTCGCAATGGAGAGCTTCCTGTACTCTCACTCCGTAATTTACTTCTTGGTCGAAAAATTCTGGTAATAGATGACAATAAGGTAAATCGTATTGTCGCTGCTGGTGCTCTACAGCGGTATGGAGCGGATGTCGTATGTGAAAACAGTGGAAGAGAAGCAATCCGACTGCTTACGCCACCCCACCATTTTGATGCATGCTTCATGGATATTCAGATGCCAGAAATGGACGGCTTTGAAGCTACAAGAAGAATTCGGGAAATCGAACTTCAAATAAAAAATGGTATCCAAGCTGGAGAACTATCAATAGAAGCATACGAAAATAAATGTGATTGGGGTGTACCCATCTTGGCCATGACTGCAGACAACCTCAAATGGAACTTTGTAGAGAGCAATCATATATTCGAGGTTGCGGATGATGGCCTGTTCACTCAGGAATGTACAGCATGCTTAAAAGGGTGTAAATTACCTCCGATCGAAGGTGATTGA 3147 42.9 MSSFSSSSSSSSSSPATSTASSSPFNVFLLYRSFQIIWLISMNWFINGGGMEAKTGLLGGGGKIWLQLWEKVIGNCFKMHHQYYQYIGSKKVRKTWWRRVLVAWVLSSALASLWIFHYMSSQATEKRKEALGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKNVSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREHFEKQQGWTIKRMDKIEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTISHVVSLDMLSGVEDRKNVIRARASGKGVLTAPFRLIKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASNQTILVNVYDTTNQSHPISMYGEDVSQDGLQHVSPLNFGDPDRKHEMRCRFKQKQAWPWLAMTTSIGILIIALLLGYIFHATLNRIAKVEDDYHEMMELKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDYVKTAQDSGKALVSLINEVLDQAKIESGKLELEAIPFNLRAILDDILSLFSGKSQEKGLELAVYISDSVPAMLIGDPGRFRQIITNLIGNSIKAKKGHIFVTVNLVEEVIESIDLEIESSTNSTLSGYPIANRRLSWAGFQTFSEEGPAACHFMPSPPELINLMVSVEDTGVGIPLEAQSCVFTPFMQVRPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSVPKIGSTFTFTAVFTKCSSNSSEYNKTQQIKNISIPTSSEFKGMRALIVDHRPIRAKVSRYHIQRLGINVEVLSDLNQCLCSSTISGSTINMIFVEQDLWDKDTSTSDLFIKNLRNSYGVPPKLFLLTSSISSSKASTTVSDVFTPTVILKPLRSGMLAASLHRVMGVGIKGNPRNGELPVLSLRNLLLGRKILVIDDNKVNRIVAAGALQRYGADVVCENSGREAIRLLTPPHHFDACFMDIQMPEMDGFEATRRIREIELQIKNGIQAGELSIEAYENKCDWGVPILAMTADNLKWNFVESNHIFEVADDGLFTQECTACLKGCKLPPIEGD 1048
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5727882 5734870 + Cp4.1LG01g11980.1 Cpe01g00966 462279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00966 1048 Gene3D CHASE domain 172 401 IPR042240 -
Cpe01g00966 1048 SUPERFAMILY CheY-like 754 881 IPR011006 -
Cpe01g00966 1048 Pfam CHASE domain 171 367 IPR006189 -
Cpe01g00966 1048 ProSiteProfiles Response regulatory domain profile. 906 1037 IPR001789 GO:0000160
Cpe01g00966 1048 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 440 521 IPR036097 GO:0000155|GO:0007165
Cpe01g00966 1048 Pfam Response regulator receiver domain 907 976 IPR001789 GO:0000160
Cpe01g00966 1048 ProSiteProfiles Response regulatory domain profile. 759 880 IPR001789 GO:0000160
Cpe01g00966 1048 Gene3D - 898 1020 - -
Cpe01g00966 1048 ProSiteProfiles Histidine kinase domain profile. 462 730 IPR005467 -
Cpe01g00966 1048 CDD HisKA 455 516 IPR003661 GO:0000155|GO:0007165
Cpe01g00966 1048 Gene3D - 424 518 - -
Cpe01g00966 1048 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 509 725 IPR036890 -
Cpe01g00966 1048 Gene3D - 119 171 - -
Cpe01g00966 1048 MobiDBLite consensus disorder prediction 1 22 - -
Cpe01g00966 1048 SMART HisKA_10 455 520 IPR003661 GO:0000155|GO:0007165
Cpe01g00966 1048 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 567 729 IPR003594 -
Cpe01g00966 1048 Pfam His Kinase A (phospho-acceptor) domain 455 520 IPR003661 GO:0000155|GO:0007165
Cpe01g00966 1048 Gene3D - 519 733 IPR036890 -
Cpe01g00966 1048 SMART REC_2 905 1024 IPR001789 GO:0000160
Cpe01g00966 1048 PRINTS Bacterial sensor protein C-terminal signature 690 708 IPR004358 GO:0016310|GO:0016772
Cpe01g00966 1048 PRINTS Bacterial sensor protein C-terminal signature 655 669 IPR004358 GO:0016310|GO:0016772
Cpe01g00966 1048 PRINTS Bacterial sensor protein C-terminal signature 673 683 IPR004358 GO:0016310|GO:0016772
Cpe01g00966 1048 CDD PRTases_typeI 855 932 IPR000836 -
Cpe01g00966 1048 CDD REC_hyHK_CKI1_RcsC-like 907 1011 - -
Cpe01g00966 1048 SMART CHASE_2 168 369 IPR006189 -
Cpe01g00966 1048 Coils Coil 432 452 - -
Cpe01g00966 1048 PANTHER HISTIDINE KINASE 3 69 1010 - -
Cpe01g00966 1048 SMART HKATPase_4 567 730 IPR003594 -
Cpe01g00966 1048 SUPERFAMILY CheY-like 904 975 IPR011006 -
Cpe01g00966 1048 ProSiteProfiles CHASE domain profile. 168 394 IPR006189 -
Cpe01g00966 1048 PANTHER TWO-COMPONENT HISTIDINE KINASE 69 1010 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00966 Cpe-Chr1:5727882 Cpe16g00390 Cpe-Chr16:5476764 0 dispersed
Cpe01g00966 Cpe-Chr1:5727882 Cpe17g01074 Cpe-Chr17:8161488 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48805 PF03924 CHASE 2.80E-37 CL0165 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00966 K14489 - csv:101216313 1749.18