Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00967 ATGATGAACGACGGATATGATGTTAGTGACCTTTATCGAGAAGCACAAACACGTTGGCTGAAGCCTCCTGAGGTGCTCTTTATCTTACAGAATCATGAGAAATATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAACTGGAGGAAAAAAAGGGACGGAAGAACTGTTGGAGAAGCACACGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCGTGTGACCACATTGTTCTTGTACACTACAGAGATATTAGTGAGGGAAGGCCTGGGGTGGAAAGTGTTCCACAATTATCTCCAGCATCGGCTTCTAGTTCTGGTTCCTATCCGTCCCAAAATCATGCTTCGGAATATCTACATTCATTGAGCCCAGGGTCTGTTGAAGTTAGTTCTGAAACTGGCAACCGTACTATTGGGTCAAATGGCGTGGATAGGCAGTATGAAATATCAGAACTAAAGAGTTCAAACGATCGTGAGGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATTGGTCCGTATTATGGTCACGAGGAAGGTTCAAATTTTAACCTTATAGACTACTATGAGATGTCCATTGAGGATCAGTTTTCAGTACTTCAGCATCCAGAGAATGCTGTCCATGATAATAGTTATACGTCATTTGAGATGCAAGATGCTAGTGGTAAACATAACCGTTATGATATGGCACATGAGTTTATATTTGGTGGTGAAGGAACTCGACCATGGGGTGATGCACTTGATTCAAGTAAGACAACCGTTCTTGAGTCTCAAGATAGGCATTCTCTCCTATGGAATGAAAATGAAAATCCATCATCATCTTCAACCGTAGACCATGAGCATCGCAACTGGCTGGACAGCGGAGGAAAAACTTTTCCTATGCTAGGAAGCTGCACATCTCCAGAATATGCTTCACCACTAGACACTCATGATGATAATTCCAACTACCACATATCATTCCTTAAACAAGACCATGGAAATTCTTTTGAAGTTGATACCAGTTTAATTGTTGCACAAGTGCAGAAATTTACAATCCGCCAAATAGTACCTGAACAGGGTTATGCCACTGAGAGTACCAAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCAAAAGCACCATGGGCTTGTATGTTTGGAGATATCGAAGTTCCTCTTCAGGTTGTTCAGAATGGGGTGCTTTGTTTTGAAGCGCCTCCACACCTTCCTGGGAAGGTTGCTTTCTTCATTACATCTGGCAATCGGGAACCCTGCAGTGAAGTCAGAGAGTTCGAATATAAAATGAATGTTTGCAGCCATTGCCAATCACATTCAAGTGGAGCTACGAAGAGCCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATTAATGCAGAAATTTGACGAGGTAGATTCTGAAGTTAGAAGCAATAATTTGAAAGCTGGCGACGATCAATGGAGTTCTTTGATAGAGGCTCTTCTAGTTGGTAGTGAAACTCCTTCTGGTACCATGGATTGGCTACTTCAAGAATTACTAAAAGACAAGTTGTATCTCTGGCTTTCTTCGCAGAAGAAAGATAGACACGATCTGGCAGGCTGTTCCTTGTCTAAGAAAGAACAAGGTGTTATACACATGATTTCCGGTTTGGGCTATGTGTGGGCACTAAACCCGATTCTCAGCTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACATTGGGCAGCACGATTTGGAAGGGAAAAAACGGTCGCTGCATTAATAGCCTCAGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGACCGAGATGGTAAAACTGCAGCGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCGGAGGTTGCCCTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAGGTGAACTTTCCAATGGCTCTGCGGAGATAGAAGCAGAAATAACTGTAAATTGCATTTCAAAGGGGAACCTCTCTTCAGCTGAGGACTGTATCCCTATGAAAAATACGTTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCGGCCCGTATTCAATCTGCTTTCCGTGCTCATTCTTTCAGAAAGCGACAGCAGAAGGAGGCAACTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCTATGTCAAAATTGAACTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAAAAATATAGAGGTTGGAAAGGTCGTAGAGAGTTTTTATCAATGCGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGCTAGGAAGCATCACAAGATAATTTGTTGGGCTGTTGGGATTCTGGATAAAGCTGTATTACGCTGGAGAAGGAAAGGAGTTGGGTTGAGAGGGTTTCGTAGCGAGATAGGGTCCATTGATGAAAGTGAAGATGGCGATATTATAAAGGTGTTCCGCAAACAAAAAGTGGAAGGAACTATTGATGAGGCTGTTTCACGAGTGCTATCCATGGTTGACTCTCCAGATGCTCGTCAGCAATATCATCGTATGCTTGAAGGATTTCGAGAAGCCAAGGCAAAACTAGATGGCACCGGTAATGAATCCGCAGAATCGACTCGTCTCAGCGATGTTAAC 2847 42.96 MMNDGYDVSDLYREAQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHNWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEGRPGVESVPQLSPASASSSGSYPSQNHASEYLHSLSPGSVEVSSETGNRTIGSNGVDRQYEISELKSSNDREVSQALRRIEEQLSLNEDSLKDIGPYYGHEEGSNFNLIDYYEMSIEDQFSVLQHPENAVHDNSYTSFEMQDASGKHNRYDMAHEFIFGGEGTRPWGDALDSSKTTVLESQDRHSLLWNENENPSSSSTVDHEHRNWLDSGGKTFPMLGSCTSPEYASPLDTHDDNSNYHISFLKQDHGNSFEVDTSLIVAQVQKFTIRQIVPEQGYATESTKVIIIGSFLCDPSKAPWACMFGDIEVPLQVVQNGVLCFEAPPHLPGKVAFFITSGNREPCSEVREFEYKMNVCSHCQSHSSGATKSPEELLLLVRLVQLLLSDSLMQKFDEVDSEVRSNNLKAGDDQWSSLIEALLVGSETPSGTMDWLLQELLKDKLYLWLSSQKKDRHDLAGCSLSKKEQGVIHMISGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKTVAALIASGASAGAVTDPSSQDRDGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEEGELSNGSAEIEAEITVNCISKGNLSSAEDCIPMKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEATFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRREFLSMRQKVVKIQAHVRGYQARKHHKIICWAVGILDKAVLRWRRKGVGLRGFRSEIGSIDESEDGDIIKVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLEGFREAKAKLDGTGNESAESTRLSDVN 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5734949 5751321 - Cp4.1LG01g11810.1 Cpe01g00967 462280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00967 949 Gene3D - 800 846 - -
Cpe01g00967 949 MobiDBLite consensus disorder prediction 132 160 - -
Cpe01g00967 949 SMART ANK_2a 625 654 IPR002110 GO:0005515
Cpe01g00967 949 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 945 - -
Cpe01g00967 949 SMART iq_5 799 821 IPR000048 GO:0005515
Cpe01g00967 949 SMART iq_5 822 844 IPR000048 GO:0005515
Cpe01g00967 949 SMART iq_5 742 764 IPR000048 GO:0005515
Cpe01g00967 949 ProSiteProfiles IQ motif profile. 823 847 IPR000048 GO:0005515
Cpe01g00967 949 ProSiteProfiles Ankyrin repeat region circular profile. 625 651 - -
Cpe01g00967 949 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677
Cpe01g00967 949 SUPERFAMILY E set domains 397 480 IPR014756 -
Cpe01g00967 949 CDD IPT 397 481 - -
Cpe01g00967 949 ProSiteProfiles Ankyrin repeat profile. 625 657 IPR002110 GO:0005515
Cpe01g00967 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 745 851 IPR027417 -
Cpe01g00967 949 SMART CG_1_2 11 129 IPR005559 GO:0003677
Cpe01g00967 949 Pfam Ankyrin repeats (3 copies) 607 684 IPR002110 GO:0005515
Cpe01g00967 949 ProSiteProfiles IQ motif profile. 743 771 IPR000048 GO:0005515
Cpe01g00967 949 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 2 945 - -
Cpe01g00967 949 Pfam IQ calmodulin-binding motif 825 844 IPR000048 GO:0005515
Cpe01g00967 949 Pfam IQ calmodulin-binding motif 802 820 IPR000048 GO:0005515
Cpe01g00967 949 MobiDBLite consensus disorder prediction 140 160 - -
Cpe01g00967 949 Gene3D Immunoglobulins 391 484 IPR013783 -
Cpe01g00967 949 Pfam CG-1 domain 14 127 IPR005559 GO:0003677
Cpe01g00967 949 ProSiteProfiles IQ motif profile. 800 829 IPR000048 GO:0005515
Cpe01g00967 949 SUPERFAMILY Ankyrin repeat 595 686 IPR036770 -
Cpe01g00967 949 Gene3D - 564 694 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00967 Cpe-Chr1:5734949 Cpe12g00311 Cpe-Chr12:2056191 2.44E-124 dispersed
Cpe01g00967 Cpe-Chr1:5734949 Cpe17g01072 Cpe-Chr17:8150984 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48806 PF03859 CG-1 2.20E-48 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00967 K21596 - csv:101222798 1617.44