Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00967 ATGATGAACGACGGATATGATGTTAGTGACCTTTATCGAGAAGCACAAACACGTTGGCTGAAGCCTCCTGAGGTGCTCTTTATCTTACAGAATCATGAGAAATATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAACTGGAGGAAAAAAAGGGACGGAAGAACTGTTGGAGAAGCACACGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCGTGTGACCACATTGTTCTTGTACACTACAGAGATATTAGTGAGGGAAGGCCTGGGGTGGAAAGTGTTCCACAATTATCTCCAGCATCGGCTTCTAGTTCTGGTTCCTATCCGTCCCAAAATCATGCTTCGGAATATCTACATTCATTGAGCCCAGGGTCTGTTGAAGTTAGTTCTGAAACTGGCAACCGTACTATTGGGTCAAATGGCGTGGATAGGCAGTATGAAATATCAGAACTAAAGAGTTCAAACGATCGTGAGGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATTGGTCCGTATTATGGTCACGAGGAAGGTTCAAATTTTAACCTTATAGACTACTATGAGATGTCCATTGAGGATCAGTTTTCAGTACTTCAGCATCCAGAGAATGCTGTCCATGATAATAGTTATACGTCATTTGAGATGCAAGATGCTAGTGGTAAACATAACCGTTATGATATGGCACATGAGTTTATATTTGGTGGTGAAGGAACTCGACCATGGGGTGATGCACTTGATTCAAGTAAGACAACCGTTCTTGAGTCTCAAGATAGGCATTCTCTCCTATGGAATGAAAATGAAAATCCATCATCATCTTCAACCGTAGACCATGAGCATCGCAACTGGCTGGACAGCGGAGGAAAAACTTTTCCTATGCTAGGAAGCTGCACATCTCCAGAATATGCTTCACCACTAGACACTCATGATGATAATTCCAACTACCACATATCATTCCTTAAACAAGACCATGGAAATTCTTTTGAAGTTGATACCAGTTTAATTGTTGCACAAGTGCAGAAATTTACAATCCGCCAAATAGTACCTGAACAGGGTTATGCCACTGAGAGTACCAAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCAAAAGCACCATGGGCTTGTATGTTTGGAGATATCGAAGTTCCTCTTCAGGTTGTTCAGAATGGGGTGCTTTGTTTTGAAGCGCCTCCACACCTTCCTGGGAAGGTTGCTTTCTTCATTACATCTGGCAATCGGGAACCCTGCAGTGAAGTCAGAGAGTTCGAATATAAAATGAATGTTTGCAGCCATTGCCAATCACATTCAAGTGGAGCTACGAAGAGCCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATTAATGCAGAAATTTGACGAGGTAGATTCTGAAGTTAGAAGCAATAATTTGAAAGCTGGCGACGATCAATGGAGTTCTTTGATAGAGGCTCTTCTAGTTGGTAGTGAAACTCCTTCTGGTACCATGGATTGGCTACTTCAAGAATTACTAAAAGACAAGTTGTATCTCTGGCTTTCTTCGCAGAAGAAAGATAGACACGATCTGGCAGGCTGTTCCTTGTCTAAGAAAGAACAAGGTGTTATACACATGATTTCCGGTTTGGGCTATGTGTGGGCACTAAACCCGATTCTCAGCTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACATTGGGCAGCACGATTTGGAAGGGAAAAAACGGTCGCTGCATTAATAGCCTCAGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGACCGAGATGGTAAAACTGCAGCGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCGGAGGTTGCCCTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAGGTGAACTTTCCAATGGCTCTGCGGAGATAGAAGCAGAAATAACTGTAAATTGCATTTCAAAGGGGAACCTCTCTTCAGCTGAGGACTGTATCCCTATGAAAAATACGTTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCGGCCCGTATTCAATCTGCTTTCCGTGCTCATTCTTTCAGAAAGCGACAGCAGAAGGAGGCAACTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCTATGTCAAAATTGAACTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAAAAATATAGAGGTTGGAAAGGTCGTAGAGAGTTTTTATCAATGCGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGCTAGGAAGCATCACAAGATAATTTGTTGGGCTGTTGGGATTCTGGATAAAGCTGTATTACGCTGGAGAAGGAAAGGAGTTGGGTTGAGAGGGTTTCGTAGCGAGATAGGGTCCATTGATGAAAGTGAAGATGGCGATATTATAAAGGTGTTCCGCAAACAAAAAGTGGAAGGAACTATTGATGAGGCTGTTTCACGAGTGCTATCCATGGTTGACTCTCCAGATGCTCGTCAGCAATATCATCGTATGCTTGAAGGATTTCGAGAAGCCAAGGCAAAACTAGATGGCACCGGTAATGAATCCGCAGAATCGACTCGTCTCAGCGATGTTAAC 2847 42.96 MMNDGYDVSDLYREAQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHNWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEGRPGVESVPQLSPASASSSGSYPSQNHASEYLHSLSPGSVEVSSETGNRTIGSNGVDRQYEISELKSSNDREVSQALRRIEEQLSLNEDSLKDIGPYYGHEEGSNFNLIDYYEMSIEDQFSVLQHPENAVHDNSYTSFEMQDASGKHNRYDMAHEFIFGGEGTRPWGDALDSSKTTVLESQDRHSLLWNENENPSSSSTVDHEHRNWLDSGGKTFPMLGSCTSPEYASPLDTHDDNSNYHISFLKQDHGNSFEVDTSLIVAQVQKFTIRQIVPEQGYATESTKVIIIGSFLCDPSKAPWACMFGDIEVPLQVVQNGVLCFEAPPHLPGKVAFFITSGNREPCSEVREFEYKMNVCSHCQSHSSGATKSPEELLLLVRLVQLLLSDSLMQKFDEVDSEVRSNNLKAGDDQWSSLIEALLVGSETPSGTMDWLLQELLKDKLYLWLSSQKKDRHDLAGCSLSKKEQGVIHMISGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKTVAALIASGASAGAVTDPSSQDRDGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEEGELSNGSAEIEAEITVNCISKGNLSSAEDCIPMKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEATFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRREFLSMRQKVVKIQAHVRGYQARKHHKIICWAVGILDKAVLRWRRKGVGLRGFRSEIGSIDESEDGDIIKVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLEGFREAKAKLDGTGNESAESTRLSDVN 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5734949 5751321 - Cp4.1LG01g11810.1 Cpe01g00967 462280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00967 949 Gene3D - 800 846 - -
Cpe01g00967 949 MobiDBLite consensus disorder prediction 132 160 - -
Cpe01g00967 949 SMART ANK_2a 625 654 IPR002110 GO:0005515
Cpe01g00967 949 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 945 - -
Cpe01g00967 949 SMART iq_5 799 821 IPR000048 GO:0005515
Cpe01g00967 949 SMART iq_5 822 844 IPR000048 GO:0005515
Cpe01g00967 949 SMART iq_5 742 764 IPR000048 GO:0005515
Cpe01g00967 949 ProSiteProfiles IQ motif profile. 823 847 IPR000048 GO:0005515
Cpe01g00967 949 ProSiteProfiles Ankyrin repeat region circular profile. 625 651 - -
Cpe01g00967 949 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677
Cpe01g00967 949 SUPERFAMILY E set domains 397 480 IPR014756 -
Cpe01g00967 949 CDD IPT 397 481 - -
Cpe01g00967 949 ProSiteProfiles Ankyrin repeat profile. 625 657 IPR002110 GO:0005515
Cpe01g00967 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 745 851 IPR027417 -
Cpe01g00967 949 SMART CG_1_2 11 129 IPR005559 GO:0003677
Cpe01g00967 949 Pfam Ankyrin repeats (3 copies) 607 684 IPR002110 GO:0005515
Cpe01g00967 949 ProSiteProfiles IQ motif profile. 743 771 IPR000048 GO:0005515
Cpe01g00967 949 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 2 945 - -
Cpe01g00967 949 Pfam IQ calmodulin-binding motif 825 844 IPR000048 GO:0005515
Cpe01g00967 949 Pfam IQ calmodulin-binding motif 802 820 IPR000048 GO:0005515
Cpe01g00967 949 MobiDBLite consensus disorder prediction 140 160 - -
Cpe01g00967 949 Gene3D Immunoglobulins 391 484 IPR013783 -
Cpe01g00967 949 Pfam CG-1 domain 14 127 IPR005559 GO:0003677
Cpe01g00967 949 ProSiteProfiles IQ motif profile. 800 829 IPR000048 GO:0005515
Cpe01g00967 949 SUPERFAMILY Ankyrin repeat 595 686 IPR036770 -
Cpe01g00967 949 Gene3D - 564 694 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00967 K21596 CAMTA; calmodulin-binding transcription activator - csv:101222798 1617.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00967 Cpe-Chr1:5734949 Cpe12g00311 Cpe-Chr12:2056191 2.44E-124 dispersed
Cpe01g00967 Cpe-Chr1:5734949 Cpe17g01072 Cpe-Chr17:8150984 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g00378 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 2.7e-269 925.6
Cpe15g00228 . 2 1066 CAMTA Transcription Factor Family AT5G64220 51.9 6.7e-260 894.4
Cpe01g00967 . 6 935 CAMTA Transcription Factor Family AT1G67310 51.0 6.8e-249 857.8
Cpe17g00057 CST 34 921 CAMTA Transcription Factor Family AT3G16940 54.1 1.9e-254 875.9
Cpe12g00311 CST 34 900 CAMTA Transcription Factor Family AT3G16940 53.7 1.1e-252 870.2
Cpe12g00311 CST 11 624 CAMTA Transcription Factor Family AT4G16150 52.6 7.6e-191 664.8
Cpe17g00057 CST 11 645 CAMTA Transcription Factor Family AT4G16150 51.6 1.3e-185 647.5
Cpe04g00378 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 2.7e-269 925.6
Cpe15g00228 . 2 1066 CAMTA Transcription Factor Family AT5G64220 51.9 6.7e-260 894.4
Cpe01g00967 . 6 935 CAMTA Transcription Factor Family AT1G67310 51.0 6.8e-249 857.8
Cpe12g00311 CST 11 624 CAMTA Transcription Factor Family AT4G16150 52.6 7.6e-191 664.8
Cpe17g00057 CST 11 645 CAMTA Transcription Factor Family AT4G16150 51.6 1.3e-185 647.5
Cpe17g00057 CST 34 921 CAMTA Transcription Factor Family AT3G16940 54.1 1.9e-254 875.9
Cpe12g00311 CST 34 900 CAMTA Transcription Factor Family AT3G16940 53.7 1.1e-252 870.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48806 PF03859 CG-1 2.20E-48 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00967 Cpe_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 37.134018 38.550728 34.793911