Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00971 ATGGGAAGAGGGAGAGTAGAGCTGAAGAGAATAGAAAACAAGATCAATAGGCAAGTCACCTTCGCTAAACGGAGAAATGGGGTTTTGAAGAAAGCTTATGAGCTCTCCGTTCTGTGCGATGCCGAAGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTCTACGAGTTTTGCAGTAGTTCAAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCCCTTGAAAGGCAACTTGATATGTCACTCAAGCACATAAGGTCAACAAGGACTCAGTACATGTTAGATCAACTCACCGATCTTCAACGTAAGGAGCATCTTCTTAACGACGCAAACAGGACTCTGAAACAAAGGTTAGTAGAAGGGTATCAAGTAAATGCTCTCCAATTGAACCAAAGTGGTGATGATATGATGTATGGAAGACACCAAGCTCACCCTCCACCCGATGCCTTCTTCCATCTTTTAGATGCCGAACCCACCTTACAAATTGGGTATCACCCAGATCCGCTAACAGTGGTCACCGCTGGGCCAAGCATGAATAATTTCCTCCCAGGGTGGTTGCCTTGA 582 45.19 MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSRNLLGEDLGPLSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRTLKQRLVEGYQVNALQLNQSGDDMMYGRHQAHPPPDAFFHLLDAEPTLQIGYHPDPLTVVTAGPSMNNFLPGWLP 193
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 5782719 5785746 - Cp4.1LG01g11860.1 Cpe01g00971 462284
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00971 193 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Cpe01g00971 193 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe01g00971 193 Pfam K-box region 59 124 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe01g00971 193 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Cpe01g00971 193 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe01g00971 193 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe01g00971 193 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe01g00971 193 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe01g00971 193 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe01g00971 193 PANTHER SERUM RESPONSE FACTOR HOMOLOG 60 179 - -
Cpe01g00971 193 ProSiteProfiles K-box domain profile. 40 136 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe01g00971 193 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 60 179 - -
Cpe01g00971 193 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 62 - -
Cpe01g00971 193 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 62 - -
Cpe01g00971 193 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677|GO:0046983
Cpe01g00971 193 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00971 Cpe-Chr1:5782719 Cpe17g01070 Cpe-Chr17:8101437 1.42E-126 dispersed
Cpe01g00970 Cpe-Chr1:5779955 Cpe01g00971 Cpe-Chr1:5782719 7.93E-27 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48808 PF01486 K-box 7.70E-21 No_clan Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00971 - - csv:101216798 340.887