Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g00971 | ATGGGAAGAGGGAGAGTAGAGCTGAAGAGAATAGAAAACAAGATCAATAGGCAAGTCACCTTCGCTAAACGGAGAAATGGGGTTTTGAAGAAAGCTTATGAGCTCTCCGTTCTGTGCGATGCCGAAGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTCTACGAGTTTTGCAGTAGTTCAAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCCCTTGAAAGGCAACTTGATATGTCACTCAAGCACATAAGGTCAACAAGGACTCAGTACATGTTAGATCAACTCACCGATCTTCAACGTAAGGAGCATCTTCTTAACGACGCAAACAGGACTCTGAAACAAAGGTTAGTAGAAGGGTATCAAGTAAATGCTCTCCAATTGAACCAAAGTGGTGATGATATGATGTATGGAAGACACCAAGCTCACCCTCCACCCGATGCCTTCTTCCATCTTTTAGATGCCGAACCCACCTTACAAATTGGGTATCACCCAGATCCGCTAACAGTGGTCACCGCTGGGCCAAGCATGAATAATTTCCTCCCAGGGTGGTTGCCTTGA | 582 | 45.19 | MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSRNLLGEDLGPLSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRTLKQRLVEGYQVNALQLNQSGDDMMYGRHQAHPPPDAFFHLLDAEPTLQIGYHPDPLTVVTAGPSMNNFLPGWLP | 193 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5782719 | 5785746 | - | Cp4.1LG01g11860.1 | Cpe01g00971 | 462284 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g00971 | 193 | Gene3D | - | 13 | 78 | IPR036879 | GO:0003677|GO:0046983 | |
Cpe01g00971 | 193 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe01g00971 | 193 | Pfam | K-box region | 59 | 124 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cpe01g00971 | 193 | CDD | MADS_MEF2_like | 2 | 61 | IPR033896 | GO:0000977|GO:0045944 | |
Cpe01g00971 | 193 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe01g00971 | 193 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe01g00971 | 193 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe01g00971 | 193 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe01g00971 | 193 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe01g00971 | 193 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 60 | 179 | - | - | |
Cpe01g00971 | 193 | ProSiteProfiles | K-box domain profile. | 40 | 136 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cpe01g00971 | 193 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG | 60 | 179 | - | - | |
Cpe01g00971 | 193 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 62 | - | - | |
Cpe01g00971 | 193 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG | 1 | 62 | - | - | |
Cpe01g00971 | 193 | SUPERFAMILY | SRF-like | 2 | 63 | IPR036879 | GO:0003677|GO:0046983 | |
Cpe01g00971 | 193 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00971 | Cpe-Chr1:5782719 | Cpe17g01070 | Cpe-Chr17:8101437 | 1.42E-126 | dispersed | |
Cpe01g00970 | Cpe-Chr1:5779955 | Cpe01g00971 | Cpe-Chr1:5782719 | 7.93E-27 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48808 | PF01486 | K-box | 7.70E-21 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g00971 | - | - | csv:101216798 | 340.887 |