Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g00972 | ATGTATTTGAGACTCAGGGGCATTGGTAATATGGGCGATGGTTCTATGGATGACATGAAAGGAACTAGAGTTTCTTTGATCGAGTCATCGGCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGCGGTCCCCAAGTCCCTTCCTGTATGGTTGATGGTTGTAGCTCAGACCTTAGCAAATGCAGGGACTATCATCGCCGCCATAAAGTATGTGAGCTCCATTCTAAAACACCAAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGTCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAGCGTCTCGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCATTTGGTAATCAATTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAGCAATGCCCCTCTTTGCAGCGGCAACTCACAGTTTGACTTTGGTGACAGAAGAAAAAGTATGTTGCTGCCTGGATCATTGGCTTGTGATTACAAAGAAAAACAATTAGCAATCTCTTGCATCCCTATAGGATTGCTTCCCAAATCATCCGATGCTCACCCATTTCTCGACGTTGAATCCAGCAACGGAGAGAATGTTCAGAAAGTGTTCGGAAACGGATCAGATCAGTTCTTCAACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCCGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCACCCCAGCCCATTTCATCCACAGTGACGGTCTTGGCTTGGAGAGTGACCCTGTTAATTCTGGTATGGTCTCGGACGGTAGCAGCCATGGCAACATACGGTGCTACCCGACGTTCCAGGATGGTCTTGCTGGATCATCTGTAGATTTATTCAGGTATTGA | 990 | 46.57 | MYLRLRGIGNMGDGSMDDMKGTRVSLIESSASRLMKRSRAPGSGPQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGMIKPESNAPLCSGNSQFDFGDRRKSMLLPGSLACDYKEKQLAISCIPIGLLPKSSDAHPFLDVESSNGENVQKVFGNGSDQFFNSDCALSLLSTPVEPGEINLSSMSQSNLITPAHFIHSDGLGLESDPVNSGMVSDGSSHGNIRCYPTFQDGLAGSSVDLFRY | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5787938 | 5789740 | - | Cp4.1LG01g11890.1 | Cpe01g00972 | 462285 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g00972 | 329 | Pfam | SBP domain | 50 | 123 | IPR004333 | GO:0003677 | |
Cpe01g00972 | 329 | ProSiteProfiles | Zinc finger SBP-type profile. | 47 | 124 | IPR004333 | GO:0003677 | |
Cpe01g00972 | 329 | SUPERFAMILY | SBT domain | 48 | 129 | IPR036893 | GO:0003677|GO:0005634 | |
Cpe01g00972 | 329 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 3 | 316 | IPR044817 | GO:0003677 | |
Cpe01g00972 | 329 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 | 3 | 316 | - | - | |
Cpe01g00972 | 329 | Gene3D | - | 41 | 111 | IPR036893 | GO:0003677|GO:0005634 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00972 | Cpe-Chr1:5787938 | Cpe09g00953 | Cpe-Chr9:8542517 | 2.17E-52 | dispersed | |
Cpe09g00597 | Cpe-Chr9:4138283 | Cpe01g00972 | Cpe-Chr1:5787938 | 1.09E-35 | dispersed | |
Cpe01g00972 | Cpe-Chr1:5787938 | Cpe17g01068 | Cpe-Chr17:8083301 | 3.73E-167 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48809 | PF03110 | SBP | 7.40E-29 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g00972 | - | - | cpep:111787814 | 657.521 |