Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00972 ATGTATTTGAGACTCAGGGGCATTGGTAATATGGGCGATGGTTCTATGGATGACATGAAAGGAACTAGAGTTTCTTTGATCGAGTCATCGGCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGCGGTCCCCAAGTCCCTTCCTGTATGGTTGATGGTTGTAGCTCAGACCTTAGCAAATGCAGGGACTATCATCGCCGCCATAAAGTATGTGAGCTCCATTCTAAAACACCAAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGTCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAGCGTCTCGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCATTTGGTAATCAATTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAGCAATGCCCCTCTTTGCAGCGGCAACTCACAGTTTGACTTTGGTGACAGAAGAAAAAGTATGTTGCTGCCTGGATCATTGGCTTGTGATTACAAAGAAAAACAATTAGCAATCTCTTGCATCCCTATAGGATTGCTTCCCAAATCATCCGATGCTCACCCATTTCTCGACGTTGAATCCAGCAACGGAGAGAATGTTCAGAAAGTGTTCGGAAACGGATCAGATCAGTTCTTCAACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCCGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCACCCCAGCCCATTTCATCCACAGTGACGGTCTTGGCTTGGAGAGTGACCCTGTTAATTCTGGTATGGTCTCGGACGGTAGCAGCCATGGCAACATACGGTGCTACCCGACGTTCCAGGATGGTCTTGCTGGATCATCTGTAGATTTATTCAGGTATTGA 990 46.57 MYLRLRGIGNMGDGSMDDMKGTRVSLIESSASRLMKRSRAPGSGPQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGMIKPESNAPLCSGNSQFDFGDRRKSMLLPGSLACDYKEKQLAISCIPIGLLPKSSDAHPFLDVESSNGENVQKVFGNGSDQFFNSDCALSLLSTPVEPGEINLSSMSQSNLITPAHFIHSDGLGLESDPVNSGMVSDGSSHGNIRCYPTFQDGLAGSSVDLFRY 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5787938 5789740 - Cp4.1LG01g11890.1 Cpe01g00972 462285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00972 329 Pfam SBP domain 50 123 IPR004333 GO:0003677
Cpe01g00972 329 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677
Cpe01g00972 329 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677|GO:0005634
Cpe01g00972 329 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 3 316 IPR044817 GO:0003677
Cpe01g00972 329 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 3 316 - -
Cpe01g00972 329 Gene3D - 41 111 IPR036893 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00972 - - - cpep:111787814 657.521
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00972 Cpe-Chr1:5787938 Cpe09g00953 Cpe-Chr9:8542517 2.17E-52 dispersed
Cpe09g00597 Cpe-Chr9:4138283 Cpe01g00972 Cpe-Chr1:5787938 1.09E-35 dispersed
Cpe01g00972 Cpe-Chr1:5787938 Cpe17g01068 Cpe-Chr17:8083301 3.73E-167 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g00825 CCT 181 1002 SBP-box Gene Family AT2G47070 55.9 1.5e-240 829.7
Cpe02g01546 CCT 179 1038 SBP-box Gene Family AT2G47070 51.1 3.7e-220 761.9
Cpe03g00825 CCT 25 1002 SBP-box Gene Family AT3G60030 54.5 2.7e-276 948.7
Cpe02g01546 CCT 25 1038 SBP-box Gene Family AT3G60030 51.7 1.1e-258 890.2
Cpe04g01623 . 1 196 SBP-box Gene Family AT5G50570 50.7 1.4e-44 177.6
Cpe01g00972 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.4e-39 161.0
Cpe17g01068 . 29 165 SBP-box Gene Family AT5G50570 58.3 7.7e-38 155.2
Cpe04g00482 . 63 166 SBP-box Gene Family AT5G50570 67.3 1.3e-37 154.5
Cpe03g00630 . 55 169 SBP-box Gene Family AT5G50570 64.1 3.8e-37 152.9
Cpe03g00825 CCT 181 1002 SBP-box Gene Family AT2G47070 55.9 1.5e-240 829.7
Cpe02g01546 CCT 179 1038 SBP-box Gene Family AT2G47070 51.1 3.7e-220 761.9
Cpe03g00825 CCT 25 1002 SBP-box Gene Family AT3G60030 54.5 2.7e-276 948.7
Cpe02g01546 CCT 25 1038 SBP-box Gene Family AT3G60030 51.7 1.1e-258 890.2
Cpe04g01623 . 1 196 SBP-box Gene Family AT5G50570 50.7 1.4e-44 177.6
Cpe01g00972 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.4e-39 161.0
Cpe17g01068 . 29 165 SBP-box Gene Family AT5G50570 58.3 7.7e-38 155.2
Cpe04g00482 . 63 166 SBP-box Gene Family AT5G50570 67.3 1.3e-37 154.5
Cpe03g00630 . 55 169 SBP-box Gene Family AT5G50570 64.1 3.8e-37 152.9
Cpe04g01623 . 1 196 SBP-box Gene Family AT5G50670 50.7 1.4e-44 177.6
Cpe01g00972 . 15 163 SBP-box Gene Family AT5G50670 54.6 1.4e-39 161.0
Cpe17g01068 . 29 165 SBP-box Gene Family AT5G50670 58.3 7.7e-38 155.2
Cpe04g00482 . 63 166 SBP-box Gene Family AT5G50670 67.3 1.3e-37 154.5
Cpe03g00630 . 55 169 SBP-box Gene Family AT5G50670 64.1 3.8e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007281 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 5 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48809 PF03110 SBP 7.40E-29 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00972 Cpe_Chr01 FPKM 2.665974 2.863934 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0