Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00972 ATGTATTTGAGACTCAGGGGCATTGGTAATATGGGCGATGGTTCTATGGATGACATGAAAGGAACTAGAGTTTCTTTGATCGAGTCATCGGCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGCGGTCCCCAAGTCCCTTCCTGTATGGTTGATGGTTGTAGCTCAGACCTTAGCAAATGCAGGGACTATCATCGCCGCCATAAAGTATGTGAGCTCCATTCTAAAACACCAAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGTCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAGCGTCTCGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCATTTGGTAATCAATTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAGCAATGCCCCTCTTTGCAGCGGCAACTCACAGTTTGACTTTGGTGACAGAAGAAAAAGTATGTTGCTGCCTGGATCATTGGCTTGTGATTACAAAGAAAAACAATTAGCAATCTCTTGCATCCCTATAGGATTGCTTCCCAAATCATCCGATGCTCACCCATTTCTCGACGTTGAATCCAGCAACGGAGAGAATGTTCAGAAAGTGTTCGGAAACGGATCAGATCAGTTCTTCAACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCCGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCACCCCAGCCCATTTCATCCACAGTGACGGTCTTGGCTTGGAGAGTGACCCTGTTAATTCTGGTATGGTCTCGGACGGTAGCAGCCATGGCAACATACGGTGCTACCCGACGTTCCAGGATGGTCTTGCTGGATCATCTGTAGATTTATTCAGGTATTGA 990 46.57 MYLRLRGIGNMGDGSMDDMKGTRVSLIESSASRLMKRSRAPGSGPQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGMIKPESNAPLCSGNSQFDFGDRRKSMLLPGSLACDYKEKQLAISCIPIGLLPKSSDAHPFLDVESSNGENVQKVFGNGSDQFFNSDCALSLLSTPVEPGEINLSSMSQSNLITPAHFIHSDGLGLESDPVNSGMVSDGSSHGNIRCYPTFQDGLAGSSVDLFRY 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5787938 5789740 - Cp4.1LG01g11890.1 Cpe01g00972 462285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00972 329 Pfam SBP domain 50 123 IPR004333 GO:0003677
Cpe01g00972 329 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677
Cpe01g00972 329 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677|GO:0005634
Cpe01g00972 329 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 3 316 IPR044817 GO:0003677
Cpe01g00972 329 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 3 316 - -
Cpe01g00972 329 Gene3D - 41 111 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00972 Cpe-Chr1:5787938 Cpe09g00953 Cpe-Chr9:8542517 2.17E-52 dispersed
Cpe09g00597 Cpe-Chr9:4138283 Cpe01g00972 Cpe-Chr1:5787938 1.09E-35 dispersed
Cpe01g00972 Cpe-Chr1:5787938 Cpe17g01068 Cpe-Chr17:8083301 3.73E-167 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48809 PF03110 SBP 7.40E-29 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00972 - - cpep:111787814 657.521