Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00990 ATGGCCTTTTACTCCCCATTTTCCCTCCTTCCTCTCTTCTTCCTCTTCCTCCGCTCCACCCTTGCCGACTACGGCGGCTGGCAGAGCGGTCATGCCACCTTTTACGGTGGCGGTGACGCGTCTGGTACTATGGGTGGAGCTTGTGGGTATGGGAACTTGTACAGCCAAGGGTATGGCACCAACACGGTGGCGCTAAGCACGGCGCTGTTCAACAACGGCCTCAGCTGTGGGGCTTGCTTCGAAATGACTTGCACAAATGATCCCAAATGGTGCCTGCCCGGAACCATTAGGGTCACCGCCACCAACTTCTGCCCCCCCAACTTTGCCCTCCCTAACAACAACGGCGGCTGGTGCAACCCTCCTCTCCAGCACTTCGACATGGCTGAGCCTGCCTTCCTTCAGATCGCTCAATACCGTGCCGGAATCGTCCCCGTCTCCTTTCGGAGAATTGGGAGTTCCGTGAGGTTCTATTTCACCGTGGCGCACGGTCTGATGACAAGCACGGTTTGGCGGAACAGTGTAGCGTTGGGCAGCTCGATTTTCCGCCGGGTGTCGCCGTCGCAATTGCAGTCCTTCACCGTCTCTTCAAATCTCTCGTTTTCGCTTCCTCTCCGACGATCAACAGCCAAAATCTTGGCCATGGCAATGTCGAATGGATCGGGCAGTGGAGTGGTTCGCTTCAAAGTATCTCCCTCAACCGCCTGCGTTATTCAGAAGGGTGACATCACAAAGTGGTTCATCGATGGTTCTTCTGATGCCATTGTTAATCCAGCTAATGAGGTAATGCTTGGAGGTGGTGGTGCTGATGGAGCGATACATAATGCTGCTGGACCTGATCTCGTGCAAGCGTGTTATTCTGTCCAAGAAGTCCAACCTGGAATCCGTTGTCCAACTGGAGAAGCACGGATTACTCCAGGTTTTCGGTTGCCAGCATCTCATGTAATCCACACCGTTGGTCCTATCTACAACGCCAGTAGTAACCCCCAGGCCTTACTGAGAAGCGCATATAGAAATTCCTTGGCTGTGGCAAAGGAGAATAACATTCAATATATTGCCTTTCCCGCCATATCCTGCGGTGTATATCGATATCCTTTTGATGAAGCTGCCACAATAGCCTTATCAACCGTTAAAGAGTTTTCCAATGGCTTGAAAGAGGTACACTTTGTCCTTTATTCTTCTGATATTTACAATGTTTGGTTGGAGAAGGCAAATGAACTGCTCAAGAACTAA 1230 51.46 MAFYSPFSLLPLFFLFLRSTLADYGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACFEMTCTNDPKWCLPGTIRVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRIGSSVRFYFTVAHGLMTSTVWRNSVALGSSIFRRVSPSQLQSFTVSSNLSFSLPLRRSTAKILAMAMSNGSGSGVVRFKVSPSTACVIQKGDITKWFIDGSSDAIVNPANEVMLGGGGADGAIHNAAGPDLVQACYSVQEVQPGIRCPTGEARITPGFRLPASHVIHTVGPIYNASSNPQALLRSAYRNSLAVAKENNIQYIAFPAISCGVYRYPFDEAATIALSTVKEFSNGLKEVHFVLYSSDIYNVWLEKANELLKN 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5865470 5880348 + Cp4.1LG01g11970.1 Cpe01g00990 462303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00990 409 Gene3D - 17 151 IPR036908 -
Cpe01g00990 409 PANTHER MACRO DOMAIN-CONTAINING PROTEIN VPA0103-LIKE ISOFORM X1 215 408 - -
Cpe01g00990 409 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Cpe01g00990 409 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Cpe01g00990 409 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cpe01g00990 409 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Cpe01g00990 409 Pfam Macro domain 255 372 IPR002589 -
Cpe01g00990 409 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 150 IPR007112 -
Cpe01g00990 409 CDD Macro_OAADPr_deacetylase 236 404 - -
Cpe01g00990 409 Gene3D Leucine Aminopeptidase, subunit E, domain 1 207 403 IPR043472 -
Cpe01g00990 409 SMART dpbb_1 62 147 IPR007112 -
Cpe01g00990 409 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 215 408 - -
Cpe01g00990 409 SUPERFAMILY Macro domain-like 235 404 IPR043472 -
Cpe01g00990 409 Pfam Lytic transglycolase 62 147 IPR009009 -
Cpe01g00990 409 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Cpe01g00990 409 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Cpe01g00990 409 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Cpe01g00990 409 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Cpe01g00990 409 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Cpe01g00990 409 SMART YBR022w_8 234 372 IPR002589 -
Cpe01g00990 409 ProSiteProfiles Macro domain profile. 222 407 IPR002589 -
Cpe01g00990 409 SUPERFAMILY Barwin-like endoglucanases 26 159 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00990 Cpe-Chr1:5865470 Cpe04g01494 Cpe-Chr4:11841897 3.00E-74 dispersed
Cpe07g00624 Cpe-Chr7:4352174 Cpe01g00990 Cpe-Chr1:5865470 1.76E-12 dispersed
Cpe11g00739 Cpe-Chr11:5723558 Cpe01g00990 Cpe-Chr1:5865470 3.82E-14 dispersed
Cpe13g00956 Cpe-Chr13:8016994 Cpe01g00990 Cpe-Chr1:5865470 1.14E-66 dispersed
Cpe01g00990 Cpe-Chr1:5865470 Cpe01g02482 Cpe-Chr1:20482482 6.39E-71 wgd
Cpe01g00990 Cpe-Chr1:5865470 Cpe13g01039 Cpe-Chr13:8521044 2.45E-85 wgd
Cpe01g00990 Cpe-Chr1:5865470 Cpe02g01228 Cpe-Chr2:11088874 7.85E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00990 K23518 - csv:101210287 407.527