Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g00996 | ATGTCCAAAGAAAGAGAGAGATTCGACGAGATAGCGAAGAAGATAAAGAGAGAAACCGATGTATCATCAAATATTCCTCCACAACAAATCATGGGGAGACGCCATTCCTTGCAGGCTTCTCCAGGGATACTCAACACCATTACTCCATGTGCAGCCTGCAAGCTCTTAAGAAGAAGATGTGCTCAAGAATGCCCCTTTTCCCCCTACTTCTCGCCTCACGAGCCTCATAAATTCGCGTCGGTTCACAAGGTTTTCGGTGCTAGTAATGTCTCGAAGATGCTCATGGAAGTTTCTGAGAATCAGAGAGCGGATGCTGCGAACAGCTTAGTTTATGAAGCGAATGTGAGGCTTCGAGATCCTGTTTATGGGTGCATGGGCGCCATTTCGTCCTTACAACACCAAATCCAAGCTTTACAAATTGAGTTAAACGCGGTGAGAGCTGAGATCTTAAGACACAAATTTAGAGAAGCTAGTAATATGATTCACTCTTCTCCTCAACCACAACAACAACAACATGTGTCTTTTCTTTCATCTTCAGCCGAGGTCGTTTCGGTTGCCGTTCCACCACCGCCACCGTCTCTACCGCTACCTCCACCATCTCATCACGACGCATCTTCCTCTTCCTCCCCTTTGTACAACCGTCCCACGGTGGCAACGGATTATAATACCATTTCAAGCAACGAGAATGTTACCTACTTTGTTAGTACTACAAGTACCGATCATCAATTGAATTCTTAG | 738 | 45.53 | MSKERERFDEIAKKIKRETDVSSNIPPQQIMGRRHSLQASPGILNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGCMGAISSLQHQIQALQIELNAVRAEILRHKFREASNMIHSSPQPQQQQHVSFLSSSAEVVSVAVPPPPPSLPLPPPSHHDASSSSSPLYNRPTVATDYNTISSNENVTYFVSTTSTDHQLNS | 245 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5909954 | 5911204 | - | Cp4.1LG01g11560.1 | Cpe01g00996 | 462309 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g00996 | 245 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 34 | 233 | - | - | |
Cpe01g00996 | 245 | MobiDBLite | consensus disorder prediction | 200 | 214 | - | - | |
Cpe01g00996 | 245 | MobiDBLite | consensus disorder prediction | 184 | 214 | - | - | |
Cpe01g00996 | 245 | Pfam | Lateral organ boundaries (LOB) domain | 49 | 146 | IPR004883 | - | |
Cpe01g00996 | 245 | Coils | Coil | 128 | 148 | - | - | |
Cpe01g00996 | 245 | PANTHER | LOB DOMAIN PROTEIN | 34 | 233 | - | - | |
Cpe01g00996 | 245 | ProSiteProfiles | LOB domain profile. | 48 | 149 | IPR004883 | - | |
Cpe01g00996 | 245 | MobiDBLite | consensus disorder prediction | 185 | 199 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe01g00996 | Cpe13g01047 | CCT | |
Cpe01g00996 | Cpe13g01047 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00996 | Cpe-Chr1:5909954 | Cpe05g01559 | Cpe-Chr5:10711597 | 1.17E-52 | dispersed | |
Cpe01g00091 | Cpe-Chr1:546748 | Cpe01g00996 | Cpe-Chr1:5909954 | 4.04E-63 | wgd | |
Cpe01g00996 | Cpe-Chr1:5909954 | Cpe13g01047 | Cpe-Chr13:8546645 | 4.74E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48810 | PF03195 | LOB | 7.10E-40 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g00996 | - | - | csv:101219425 | 372.089 |