Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00996 ATGTCCAAAGAAAGAGAGAGATTCGACGAGATAGCGAAGAAGATAAAGAGAGAAACCGATGTATCATCAAATATTCCTCCACAACAAATCATGGGGAGACGCCATTCCTTGCAGGCTTCTCCAGGGATACTCAACACCATTACTCCATGTGCAGCCTGCAAGCTCTTAAGAAGAAGATGTGCTCAAGAATGCCCCTTTTCCCCCTACTTCTCGCCTCACGAGCCTCATAAATTCGCGTCGGTTCACAAGGTTTTCGGTGCTAGTAATGTCTCGAAGATGCTCATGGAAGTTTCTGAGAATCAGAGAGCGGATGCTGCGAACAGCTTAGTTTATGAAGCGAATGTGAGGCTTCGAGATCCTGTTTATGGGTGCATGGGCGCCATTTCGTCCTTACAACACCAAATCCAAGCTTTACAAATTGAGTTAAACGCGGTGAGAGCTGAGATCTTAAGACACAAATTTAGAGAAGCTAGTAATATGATTCACTCTTCTCCTCAACCACAACAACAACAACATGTGTCTTTTCTTTCATCTTCAGCCGAGGTCGTTTCGGTTGCCGTTCCACCACCGCCACCGTCTCTACCGCTACCTCCACCATCTCATCACGACGCATCTTCCTCTTCCTCCCCTTTGTACAACCGTCCCACGGTGGCAACGGATTATAATACCATTTCAAGCAACGAGAATGTTACCTACTTTGTTAGTACTACAAGTACCGATCATCAATTGAATTCTTAG 738 45.53 MSKERERFDEIAKKIKRETDVSSNIPPQQIMGRRHSLQASPGILNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGCMGAISSLQHQIQALQIELNAVRAEILRHKFREASNMIHSSPQPQQQQHVSFLSSSAEVVSVAVPPPPPSLPLPPPSHHDASSSSSPLYNRPTVATDYNTISSNENVTYFVSTTSTDHQLNS 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5909954 5911204 - Cp4.1LG01g11560.1 Cpe01g00996 462309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00996 245 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 233 - -
Cpe01g00996 245 MobiDBLite consensus disorder prediction 200 214 - -
Cpe01g00996 245 MobiDBLite consensus disorder prediction 184 214 - -
Cpe01g00996 245 Pfam Lateral organ boundaries (LOB) domain 49 146 IPR004883 -
Cpe01g00996 245 Coils Coil 128 148 - -
Cpe01g00996 245 PANTHER LOB DOMAIN PROTEIN 34 233 - -
Cpe01g00996 245 ProSiteProfiles LOB domain profile. 48 149 IPR004883 -
Cpe01g00996 245 MobiDBLite consensus disorder prediction 185 199 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00996 Cpe13g01047 CCT
Cpe01g00996 Cpe13g01047 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00996 Cpe-Chr1:5909954 Cpe05g01559 Cpe-Chr5:10711597 1.17E-52 dispersed
Cpe01g00091 Cpe-Chr1:546748 Cpe01g00996 Cpe-Chr1:5909954 4.04E-63 wgd
Cpe01g00996 Cpe-Chr1:5909954 Cpe13g01047 Cpe-Chr13:8546645 4.74E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48810 PF03195 LOB 7.10E-40 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00996 - - csv:101219425 372.089