Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00998 ATGTCGTGCATTCACAACACCCCATTACCTTGTTTCTCTGCTTCCTCTTCTTCTTTCCCCAGAAGTAATCGATGCGCTTCTTTTAAGTCTCGAATCCACTGTACTCTTGGAGGAACTGTAGCAGAACCAAAATCTACCACTTCTGCAGAACCGTTGTTGCTTAATGCTGTTCGTGGTGAGGATGTCGAAAGACCCCCAGTTTGGTTGATGAGGCAAGCAGGGAGATTATATTGTTCTATGGTGGCGGTCGGTTTCTCAATTGAAATTTTGTTTACTAGAAAAGACTATCTTTTGCACTCTGCGGTGGATTTGGTGGGATTTGCAGCCCATAAGCCGGATAGTTATAGTACTCATAAGAGTTACCAAGTCATTTGTGAAAAATACCCTTCATTTCGTCAAAGGTCCGAAAATACGGATCTTGTTGTGGAAATTTCGCTTCAGCCCTGGAAAGTCTTTAAGCCTGATGGGGTGATCTTATTCTCAGACATTCTCACTCCGCTATCCGGGATGAATATTCCCTTCGACATCGTCAAAGGTAAGGGTCCGATCATCGCCAACCCTATAAGCGAAGCTTCTCAAGTGAATGAAGTGAGGGAGTTTGTCCCTGAAGAGAATGTTCCATATGTTGGGGAAGCTTTGACGATTCTGCGAAAAGAGGTTGACAACAAAGCAGCAGTTCTTGGTTTCGTTGGGGCTCCTTTCACCCTTGCATCATACGTGGTCGAAGGTGGTTCGTCGAAGCACTTTTCAAAAATAAAAAGGCTCGCTTTCTCTCAGCCAAAGGTTCTTCATGCATTGCTCCAGAAGTTTACAAGCTCAATGGCTAGGTACGTTCAATACCAAGCAGACAACGGAGCGCAAGCCGTTCAAATCTTCGATTCATGGGCGACAGAGCTCAGCCCCGTGGACTTCGAAGAATTCAGTCTCCCATACTTGAAGCAGATTGTGGATTCTGTGAAGAAAACACATCCAGACCTTCCACTGATTCTGTATGCCAGTGGGTCTGGGGGCTTACTTGAAAGGCTGGCTTCAACTGGTGTCGACGTAGTTAGCTTAGATTGGACGGTCGACATGGCTGAAGGTAGGAGGCGATTAGGAGCAGACGTAGCAGTACAGGGTAATGTCGACCCCGGCGTTCTCTTCGGGTCCAAGGAGTTCATCACCCAAAGGATAAATGATACTGTGAAGAAGGCAGGTAAAGGGAAGCACATATTGAATCTAGGCCATGGCATTGTTGTGGGTACACCTGAGGAAAATGTAGCTCATTTCTTTGAGGTTGCTAAAGGAATTAGGTCGGCGGATTTGCTCCTCAAAACCCACCAGATTTCTAAACTCTACACAATTTTGATTACTTCGATCGTTAACGAGAGGGAAGAAAAAAGGGAAAGAATCAGTGCATCTCAGAAGAAAATGGGAGCTTCTAGCCTCGCTTGTTTTTCATCGCTATTTGCAGTTTTTCCATCTCATAATAATGCGCACAACAAATCCTTACCATTTTGTTCAAATCCTTCAAAACCCCTCTTCCGATTGAACAAGATCCGCTGCGGACTGCCTGAGAGTGGAATTCGGCAAACCCCCTCAAGTTCCAGAGCTTCCTCTTCCAAGAACAGGATGGAGGAGTACAATTTGGCTATGAAGAAGATGATGAGGAATCCATATGAGTATCACCATGAACTGGGTATGAACTATACTGTGATAGCTGACAATTTGATCGTCGGTTCCCAGCCTCAGAAACCGGAAGATATCGATTTCTTGAAGGAGGAAGAAGGTGTTGCCTATATTCTGAATTTACAGCAGGATAAGGATGTCGAGTACTGGGGAATCGACTTACAGTCGGTTATAGAAAGATGTAAAGAACTTGGAATTCATCATATGAGGCAACCGGCTAAGGATTTTGATCCAGACTCCCTGAGAAATGGATTGCCCAAAGCTGTTTCCTTGTTAGAATGGGCGATTTCGGAGGGTAAAGGAAAAGCTTACGTGCATTGCACCGCTGGATTAGGCAGGGCCCCTGCCGTTGCAATAGCATACCTGTACTGGTTTTGTGGAATGAATGCAACATATGAAGCACTGACTTCAAAAAGACCTTGTGGACCAAGTAAAAAAGCCATCCGCGGAGCCACGTACGATCTATCGAAAAATGATCCAGGGAAGGAGCCATTCGAGAGCCTTCCAGATAACGCATTCGAGGATATCGCAGATTGGGAGAGAAACTTGATTCAGGATCGGGTGCGTGCAATACGTGCAGGTTCAACGTCGTTCGGTTTTTACCAGGATGATGGATTGGACAATATAGAATGA 2301 45.33 MSCIHNTPLPCFSASSSSFPRSNRCASFKSRIHCTLGGTVAEPKSTTSAEPLLLNAVRGEDVERPPVWLMRQAGRLYCSMVAVGFSIEILFTRKDYLLHSAVDLVGFAAHKPDSYSTHKSYQVICEKYPSFRQRSENTDLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPIIANPISEASQVNEVREFVPEENVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLQKFTSSMARYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKKTHPDLPLILYASGSGGLLERLASTGVDVVSLDWTVDMAEGRRRLGADVAVQGNVDPGVLFGSKEFITQRINDTVKKAGKGKHILNLGHGIVVGTPEENVAHFFEVAKGIRSADLLLKTHQISKLYTILITSIVNEREEKRERISASQKKMGASSLACFSSLFAVFPSHNNAHNKSLPFCSNPSKPLFRLNKIRCGLPESGIRQTPSSSRASSSKNRMEEYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDIDFLKEEEGVAYILNLQQDKDVEYWGIDLQSVIERCKELGIHHMRQPAKDFDPDSLRNGLPKAVSLLEWAISEGKGKAYVHCTAGLGRAPAVAIAYLYWFCGMNATYEALTSKRPCGPSKKAIRGATYDLSKNDPGKEPFESLPDNAFEDIADWERNLIQDRVRAIRAGSTSFGFYQDDGLDNIE 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5917188 5924545 + Cp4.1LG01g11700.1 Cpe01g00998 462311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00998 766 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 227 243 IPR000257 GO:0004853|GO:0006779
Cpe01g00998 766 CDD URO-D 54 428 IPR006361 GO:0004853|GO:0006779
Cpe01g00998 766 Hamap Uroporphyrinogen decarboxylase [hemE]. 50 431 IPR006361 GO:0004853|GO:0006779
Cpe01g00998 766 SUPERFAMILY UROD/MetE-like 52 431 IPR038071 -
Cpe01g00998 766 ProSiteProfiles Dual specificity protein phosphatase domain profile. 562 720 IPR020422 GO:0006470|GO:0008138
Cpe01g00998 766 Gene3D - 39 431 IPR038071 -
Cpe01g00998 766 Pfam Uroporphyrinogen decarboxylase (URO-D) 128 428 IPR000257 GO:0004853|GO:0006779
Cpe01g00998 766 Pfam Uroporphyrinogen decarboxylase (URO-D) 52 83 IPR000257 GO:0004853|GO:0006779
Cpe01g00998 766 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 2, CHLOROPLASTIC 25 431 - -
Cpe01g00998 766 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 25 431 - -
Cpe01g00998 766 CDD DSP_laforin-like 561 706 IPR045204 GO:0019203|GO:0046838
Cpe01g00998 766 Gene3D Protein tyrosine phosphatase superfamily 545 750 IPR029021 -
Cpe01g00998 766 TIGRFAM hemE: uroporphyrinogen decarboxylase 119 428 IPR006361 GO:0004853|GO:0006779
Cpe01g00998 766 Pfam Dual specificity phosphatase, catalytic domain 585 696 IPR000340 GO:0008138|GO:0016311
Cpe01g00998 766 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 66 75 IPR000257 GO:0004853|GO:0006779
Cpe01g00998 766 Coils Coil 531 551 - -
Cpe01g00998 766 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 555 695 IPR029021 -
Cpe01g00998 766 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 639 678 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00998 Cpe-Chr1:5917188 Cpe01g01265 Cpe-Chr1:7587491 2.40E-41 dispersed
Cpe14g00371 Cpe-Chr14:2269164 Cpe01g00998 Cpe-Chr1:5917188 5.30E-126 transposed
Cpe01g00092 Cpe-Chr1:548054 Cpe01g00998 Cpe-Chr1:5917188 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00998 K01599 - csv:101212245 714.916