Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00998 ATGTCGTGCATTCACAACACCCCATTACCTTGTTTCTCTGCTTCCTCTTCTTCTTTCCCCAGAAGTAATCGATGCGCTTCTTTTAAGTCTCGAATCCACTGTACTCTTGGAGGAACTGTAGCAGAACCAAAATCTACCACTTCTGCAGAACCGTTGTTGCTTAATGCTGTTCGTGGTGAGGATGTCGAAAGACCCCCAGTTTGGTTGATGAGGCAAGCAGGGAGATTATATTGTTCTATGGTGGCGGTCGGTTTCTCAATTGAAATTTTGTTTACTAGAAAAGACTATCTTTTGCACTCTGCGGTGGATTTGGTGGGATTTGCAGCCCATAAGCCGGATAGTTATAGTACTCATAAGAGTTACCAAGTCATTTGTGAAAAATACCCTTCATTTCGTCAAAGGTCCGAAAATACGGATCTTGTTGTGGAAATTTCGCTTCAGCCCTGGAAAGTCTTTAAGCCTGATGGGGTGATCTTATTCTCAGACATTCTCACTCCGCTATCCGGGATGAATATTCCCTTCGACATCGTCAAAGGTAAGGGTCCGATCATCGCCAACCCTATAAGCGAAGCTTCTCAAGTGAATGAAGTGAGGGAGTTTGTCCCTGAAGAGAATGTTCCATATGTTGGGGAAGCTTTGACGATTCTGCGAAAAGAGGTTGACAACAAAGCAGCAGTTCTTGGTTTCGTTGGGGCTCCTTTCACCCTTGCATCATACGTGGTCGAAGGTGGTTCGTCGAAGCACTTTTCAAAAATAAAAAGGCTCGCTTTCTCTCAGCCAAAGGTTCTTCATGCATTGCTCCAGAAGTTTACAAGCTCAATGGCTAGGTACGTTCAATACCAAGCAGACAACGGAGCGCAAGCCGTTCAAATCTTCGATTCATGGGCGACAGAGCTCAGCCCCGTGGACTTCGAAGAATTCAGTCTCCCATACTTGAAGCAGATTGTGGATTCTGTGAAGAAAACACATCCAGACCTTCCACTGATTCTGTATGCCAGTGGGTCTGGGGGCTTACTTGAAAGGCTGGCTTCAACTGGTGTCGACGTAGTTAGCTTAGATTGGACGGTCGACATGGCTGAAGGTAGGAGGCGATTAGGAGCAGACGTAGCAGTACAGGGTAATGTCGACCCCGGCGTTCTCTTCGGGTCCAAGGAGTTCATCACCCAAAGGATAAATGATACTGTGAAGAAGGCAGGTAAAGGGAAGCACATATTGAATCTAGGCCATGGCATTGTTGTGGGTACACCTGAGGAAAATGTAGCTCATTTCTTTGAGGTTGCTAAAGGAATTAGGTCGGCGGATTTGCTCCTCAAAACCCACCAGATTTCTAAACTCTACACAATTTTGATTACTTCGATCGTTAACGAGAGGGAAGAAAAAAGGGAAAGAATCAGTGCATCTCAGAAGAAAATGGGAGCTTCTAGCCTCGCTTGTTTTTCATCGCTATTTGCAGTTTTTCCATCTCATAATAATGCGCACAACAAATCCTTACCATTTTGTTCAAATCCTTCAAAACCCCTCTTCCGATTGAACAAGATCCGCTGCGGACTGCCTGAGAGTGGAATTCGGCAAACCCCCTCAAGTTCCAGAGCTTCCTCTTCCAAGAACAGGATGGAGGAGTACAATTTGGCTATGAAGAAGATGATGAGGAATCCATATGAGTATCACCATGAACTGGGTATGAACTATACTGTGATAGCTGACAATTTGATCGTCGGTTCCCAGCCTCAGAAACCGGAAGATATCGATTTCTTGAAGGAGGAAGAAGGTGTTGCCTATATTCTGAATTTACAGCAGGATAAGGATGTCGAGTACTGGGGAATCGACTTACAGTCGGTTATAGAAAGATGTAAAGAACTTGGAATTCATCATATGAGGCAACCGGCTAAGGATTTTGATCCAGACTCCCTGAGAAATGGATTGCCCAAAGCTGTTTCCTTGTTAGAATGGGCGATTTCGGAGGGTAAAGGAAAAGCTTACGTGCATTGCACCGCTGGATTAGGCAGGGCCCCTGCCGTTGCAATAGCATACCTGTACTGGTTTTGTGGAATGAATGCAACATATGAAGCACTGACTTCAAAAAGACCTTGTGGACCAAGTAAAAAAGCCATCCGCGGAGCCACGTACGATCTATCGAAAAATGATCCAGGGAAGGAGCCATTCGAGAGCCTTCCAGATAACGCATTCGAGGATATCGCAGATTGGGAGAGAAACTTGATTCAGGATCGGGTGCGTGCAATACGTGCAGGTTCAACGTCGTTCGGTTTTTACCAGGATGATGGATTGGACAATATAGAATGA 2301 45.33 MSCIHNTPLPCFSASSSSFPRSNRCASFKSRIHCTLGGTVAEPKSTTSAEPLLLNAVRGEDVERPPVWLMRQAGRLYCSMVAVGFSIEILFTRKDYLLHSAVDLVGFAAHKPDSYSTHKSYQVICEKYPSFRQRSENTDLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPIIANPISEASQVNEVREFVPEENVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLQKFTSSMARYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKKTHPDLPLILYASGSGGLLERLASTGVDVVSLDWTVDMAEGRRRLGADVAVQGNVDPGVLFGSKEFITQRINDTVKKAGKGKHILNLGHGIVVGTPEENVAHFFEVAKGIRSADLLLKTHQISKLYTILITSIVNEREEKRERISASQKKMGASSLACFSSLFAVFPSHNNAHNKSLPFCSNPSKPLFRLNKIRCGLPESGIRQTPSSSRASSSKNRMEEYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDIDFLKEEEGVAYILNLQQDKDVEYWGIDLQSVIERCKELGIHHMRQPAKDFDPDSLRNGLPKAVSLLEWAISEGKGKAYVHCTAGLGRAPAVAIAYLYWFCGMNATYEALTSKRPCGPSKKAIRGATYDLSKNDPGKEPFESLPDNAFEDIADWERNLIQDRVRAIRAGSTSFGFYQDDGLDNIE 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5917188 5924545 + Cp4.1LG01g11700.1 Cpe01g00998 462311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00998 766 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 227 243 IPR000257 GO:0004853|GO:0006779
Cpe01g00998 766 CDD URO-D 54 428 IPR006361 GO:0004853|GO:0006779
Cpe01g00998 766 Hamap Uroporphyrinogen decarboxylase [hemE]. 50 431 IPR006361 GO:0004853|GO:0006779
Cpe01g00998 766 SUPERFAMILY UROD/MetE-like 52 431 IPR038071 -
Cpe01g00998 766 ProSiteProfiles Dual specificity protein phosphatase domain profile. 562 720 IPR020422 GO:0006470|GO:0008138
Cpe01g00998 766 Gene3D - 39 431 IPR038071 -
Cpe01g00998 766 Pfam Uroporphyrinogen decarboxylase (URO-D) 128 428 IPR000257 GO:0004853|GO:0006779
Cpe01g00998 766 Pfam Uroporphyrinogen decarboxylase (URO-D) 52 83 IPR000257 GO:0004853|GO:0006779
Cpe01g00998 766 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 2, CHLOROPLASTIC 25 431 - -
Cpe01g00998 766 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 25 431 - -
Cpe01g00998 766 CDD DSP_laforin-like 561 706 IPR045204 GO:0019203|GO:0046838
Cpe01g00998 766 Gene3D Protein tyrosine phosphatase superfamily 545 750 IPR029021 -
Cpe01g00998 766 TIGRFAM hemE: uroporphyrinogen decarboxylase 119 428 IPR006361 GO:0004853|GO:0006779
Cpe01g00998 766 Pfam Dual specificity phosphatase, catalytic domain 585 696 IPR000340 GO:0008138|GO:0016311
Cpe01g00998 766 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 66 75 IPR000257 GO:0004853|GO:0006779
Cpe01g00998 766 Coils Coil 531 551 - -
Cpe01g00998 766 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 555 695 IPR029021 -
Cpe01g00998 766 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 639 678 IPR000387 GO:0016311|GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00998 K01599 hemE, UROD; uroporphyrinogen decarboxylase [EC:4.1.1.37] - csv:101212245 714.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00998 Cpe-Chr1:5917188 Cpe01g01265 Cpe-Chr1:7587491 2.40E-41 dispersed
Cpe14g00371 Cpe-Chr14:2269164 Cpe01g00998 Cpe-Chr1:5917188 5.30E-126 transposed
Cpe01g00092 Cpe-Chr1:548054 Cpe01g00998 Cpe-Chr1:5917188 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g00296 CST 6 612 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 2.2e-181 632.9
Cpe19g00640 . 33 650 Protein tyrosine phosphatase (PTP) family AT3G50110 55.6 3.4e-174 609.0
Cpe15g00475 CST 42 388 Protein tyrosine phosphatase (PTP) family AT3G50110 65.0 9.1e-135 478.0
Cpe04g00171 CCT 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.9e-157 552.7
Cpe03g00496 CCT 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 1.4e-152 536.6
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT3G10550 66.2 0.0e+00 1121.7
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT5G04540 62.6 4.8e-309 1057.4
Cpe18g00562 . 1 1191 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 0.0e+00 1094.0
Cpe04g01248 . 1 1233 Protein tyrosine phosphatase (PTP) family AT5G58160 54.6 0.0e+00 1078.5
Cpe02g00327 CCT 1 1361 Protein tyrosine phosphatase (PTP) family AT5G58160 51.6 7.8e-295 1010.7
Cpe06g00297 CCT 15 1312 Protein tyrosine phosphatase (PTP) family AT5G58160 50.3 4.4e-290 995.0
Cpe06g00927 . 82 372 Protein tyrosine phosphatase (PTP) family AT1G71860 65.2 4.9e-111 398.3
Cpe18g00937 . 13 910 Protein tyrosine phosphatase (PTP) family AT5G23720 56.8 1.7e-278 956.1
Cpe17g00126 . 60 198 Protein tyrosine phosphatase (PTP) family AT3G06110 54.3 2.9e-40 162.2
Cpe15g00859 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 5.8e-71 264.2
Cpe01g01265 . 104 384 Protein tyrosine phosphatase (PTP) family AT3G52180 70.8 5.6e-116 414.5
Cpe09g00392 . 111 391 Protein tyrosine phosphatase (PTP) family AT3G52180 66.9 7.8e-110 394.0
Cpe01g00998 . 533 749 Protein tyrosine phosphatase (PTP) family AT3G10940 77.6 1.8e-103 372.9
Cpe04g00550 . 143 585 Protein tyrosine phosphatase (PTP) family AT3G01510 71.0 2.0e-197 685.6
Cpe05g01529 . 9 215 Protein tyrosine phosphatase (PTP) family AT2G32960 57.3 2.4e-73 272.7
Cpe04g00827 . 45 211 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 2.3e-68 256.1
Cpe16g00749 . 43 228 Protein tyrosine phosphatase (PTP) family AT2G32960 59.7 5.1e-68 255.0
Cpe08g00726 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 2.3e-100 362.8
Cpe14g00928 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 54.5 5.8e-96 348.2
Cpe07g01040 CST 17 195 Protein tyrosine phosphatase (PTP) family AT2G35680 72.1 2.1e-74 276.6
Cpe11g01148 CST 22 257 Protein tyrosine phosphatase (PTP) family AT2G35680 54.8 6.2e-74 275.0
Cpe11g01158 . 22 257 Protein tyrosine phosphatase (PTP) family AT2G35680 54.8 6.2e-74 275.0
Cpe14g00928 . 37 212 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 2.2e-44 176.0
Cpe07g01040 CST 27 198 Protein tyrosine phosphatase (PTP) family AT5G56610 52.9 4.1e-43 171.8
Cpe08g00726 . 37 209 Protein tyrosine phosphatase (PTP) family AT5G56610 50.3 4.1e-43 171.8
Cpe05g01529 . 49 215 Protein tyrosine phosphatase (PTP) family AT4G03960 76.0 6.7e-76 280.8
Cpe16g00749 . 40 229 Protein tyrosine phosphatase (PTP) family AT4G03960 68.4 9.0e-73 270.4
Cpe04g00827 . 42 211 Protein tyrosine phosphatase (PTP) family AT4G03960 72.4 5.9e-72 267.7
Cpe18g00256 . 15 170 Protein tyrosine phosphatase (PTP) family AT4G03960 59.6 1.5e-54 209.9
Cpe18g00256 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 68.4 3.6e-77 285.0
Cpe05g01529 . 43 209 Protein tyrosine phosphatase (PTP) family AT3G02800 62.3 3.2e-57 218.8
Cpe04g00827 . 40 200 Protein tyrosine phosphatase (PTP) family AT3G02800 56.5 3.7e-53 205.3
Cpe16g00749 . 37 219 Protein tyrosine phosphatase (PTP) family AT3G02800 54.6 9.0e-52 200.7
Cpe01g01110 CCT 11 196 Protein tyrosine phosphatase (PTP) family AT3G55270 65.8 1.3e-61 235.3
Cpe01g00201 CCT 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 63.0 3.8e-58 223.8
Cpe04g00171 CCT 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.9e-157 552.7
Cpe03g00496 CCT 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 1.4e-152 536.6
Cpe04g00296 CST 8 612 Protein tyrosine phosphatase (PTP) family AT3G19420 63.8 1.8e-220 762.7
Cpe19g00640 . 31 650 Protein tyrosine phosphatase (PTP) family AT3G19420 57.6 3.1e-188 655.6
Cpe15g00475 CST 40 389 Protein tyrosine phosphatase (PTP) family AT3G19420 73.3 1.6e-160 563.5
Cpe04g00296 CST 6 612 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 2.2e-181 632.9
Cpe19g00640 . 33 650 Protein tyrosine phosphatase (PTP) family AT3G50110 55.6 3.4e-174 609.0
Cpe15g00475 CST 42 388 Protein tyrosine phosphatase (PTP) family AT3G50110 65.0 9.1e-135 478.0
Cpe18g00562 . 1 1191 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 0.0e+00 1094.0
Cpe04g01248 . 1 1233 Protein tyrosine phosphatase (PTP) family AT5G58160 54.6 0.0e+00 1078.5
Cpe02g00327 CCT 1 1361 Protein tyrosine phosphatase (PTP) family AT5G58160 51.6 7.8e-295 1010.7
Cpe06g00297 CCT 15 1312 Protein tyrosine phosphatase (PTP) family AT5G58160 50.3 4.4e-290 995.0
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT3G10550 66.2 0.0e+00 1121.7
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT5G04540 62.6 4.8e-309 1057.4
Cpe14g00952 . 20 339 Protein tyrosine phosphatase (PTP) family AT2G35320 60.0 1.4e-109 393.3
Cpe10g00935 CCT 1 638 Protein tyrosine phosphatase (PTP) family AT3G09100 64.7 1.5e-249 859.4
Cpe19g00296 CCT 24 625 Protein tyrosine phosphatase (PTP) family AT3G09100 66.7 6.1e-246 847.4
Cpe19g00296 CCT 24 625 Protein tyrosine phosphatase (PTP) family AT5G01290 63.8 8.3e-232 800.4
Cpe10g00935 CCT 1 638 Protein tyrosine phosphatase (PTP) family AT5G01290 62.2 2.7e-230 795.4
Cpe19g00296 CCT 66 625 Protein tyrosine phosphatase (PTP) family AT5G28210 54.6 3.2e-172 602.4
Cpe10g00935 CCT 82 638 Protein tyrosine phosphatase (PTP) family AT5G28210 54.4 8.6e-170 594.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006238 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00998 Cpe_Chr01 FPKM 81.815735 84.614204 4.828454 4.924724 0.0 0.0 0.0 1.009811 0.338125 0.491803