Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01012 ATGGATGAAATCCAAACCCCATGTGATTCCAACTCTTGTTCGAGACACCCACTTCCGGATTTTCATGTTTTGTTTACTCAGGCCGCTGCTGATGGGTTCTGTTCTTCAGGAAAGGAGCAGGAAAAATGGAAGATTCTGAGAAAAAACCCTAATGGGTTTCGTTTTGGATTGGGTTTGTTCTTTTTGTTGCTTAATTTGGTCACCATTCGACCTGCTTTGAGCCAAGATTGGGATGGTGTGGTTGTCACACAGGCTGATTTCCAATCCCTTCAGGCGTTTAAGCAGGAGCTTGATGATCCTAAAGGGTTCTTGAAAAGTTGGAACGATAGTGGATTTGGGGCTTGTTCTGGTGGTTGGGTTGGGATTAAATGTGCTAAGGGACAGGTTATTGTTATTCAGCTTCCATGGAAGGGCTTGGGAGGTAGAATCACTGATAAGATCGGCCAACTTCAGGCCCTTAGGAAGCTCAGCTTACATGACAACTTCATTGGTGGATCAATCCCTTCTTCATTAGGACTTCTTCCAAATCTTCGAGGCGTTCAGTTGTTCAACAATCGATTTTCGGGTTCCATTCCGGCATCATTGGGGCTTTGTCCTCTGCTTCAAACTCTTCATGTCAGTAACAATTTGCTCACCGGAGCTATCCCACCTACGTTGGCTAATTCCACCAAGCTTTATTGGCTTAACTTGAGCTTTAACTCGTTTTCGGGTTCGATCCCGATGAGTCTAACTCGATCGGTGTCGCTTACTTATCTTGATCTTCAACACAACAATCTCTCAGGCAGCATCCCCGACTCTTGGGGCGGCGACGCCACTGATCGAAACCGGGTGTTTCAGCTCAAGTCGATGGCTCTTGATGGCAATCTCCTCTCAGGTATCATACCAGCTTCCTTAAGCAAGTTAAGTGAGCTTCAAGTGGTTTCTCTTGGCCATAATAGATTGAATGGTGGGATTCCAGAAGAAATTAGTAGGCTTTCTCTGCTCAAAACTCTGGATGTTTCTAACAATTTCCTTAATGGAAGTATGCCTCAAAGTTTTGATAGTTTGAGAAATCTCTCTGTTCTTAACTTGAGTAGAAACAGGTTCAATGGTCAAATTCCTGCAAATTTAGGGAACATTTCAACACTTAAACAACTTGATTTATCTCAGAACAATCTAAGTGGAGAAATACCAGCTTCTCTTGCTGAATTGGAAGGTCTTCAATCCTTAAATGTCTCGTACAACAACCTTTCGGGTTCTGTTCCTTCGGCTCTCGCCGAAAAATTTAGTGCAAGTTCCTTTGTTGGGAACATCCAGCTCTGTGGGTTCAGTGGTTCGACTCCGTGCCCGTCCCCTGTTCCTTCTCTAGAAGCTCCAGCTCCTCCACCAGAAAGTTCGGTGTCTCGACATCGGAAGTTAAGTACTAAAGATATAATACTCATAGTAGCAGGAGCTCTTCTTCTAGTATTGGTTATAGTATTCTTTGTACTGCTGTGCTGCTTGATTAGGAAGAGGGCTGCTTCAAAAGAAAAGGGTGGTGAGGCGGCAGCTGCAGCAGCAGCCGGGGCTGCGAGGCCGAAGAAGGACGTCCCTCCGACTAGCAGTGAAGTTGAAGTGGGAGGAGGGGATGCCGGTGGGAAGCTCGTCCATTTCGACGGGAAAACGGTGTTCACAGCAGATGATCTATTGTGTGCAACAGCAGAAATAATGGGAAAGAGTACTTATGGGACTGTTTACAAGGCCACATTGGAGGATGGAAACCAAGTTGCAGTGAAGAGATTGAGAGAGAAGATCACCAAGAGCCAGAAAGAATTTGAAGCAGAGGTCAACATTCTTGGCAAGGTCAGGCATCCAAATCTTCTAGCTTTAAGAGCTTATTACTTGGGACCCAAAGGAGAAAAGCTTCTCGTTTTCGATTACATGCCGAACGGGAGTCTTGCAGCGTTCCTGCACGGGAAGTCCCCGGGTGAAGCCATGAACGGTGTCGATTTGCCACAATGGGTTGCATCAATAGTCAAAGAGGAGTGGACTAATGAAGTTTTCGATTTGGAGTTGATGAGGGATGCATCTAGCATTGGAGATGAATTACTAAACACTCTGAAACTCGCTTTGCATTGTGTCGATCCTTCACCGTCGGCAAGACCGGAAGTTCAACAAGTTCTGCAACAACTGGAGGAGATTAGGCCAGAAACCACTCCCAGTTCTGGGGATGATGGAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTCCCCCTTCAACAAGCGAGTGA 2250 46.13 MDEIQTPCDSNSCSRHPLPDFHVLFTQAAADGFCSSGKEQEKWKILRKNPNGFRFGLGLFFLLLNLVTIRPALSQDWDGVVVTQADFQSLQAFKQELDDPKGFLKSWNDSGFGACSGGWVGIKCAKGQVIVIQLPWKGLGGRITDKIGQLQALRKLSLHDNFIGGSIPSSLGLLPNLRGVQLFNNRFSGSIPASLGLCPLLQTLHVSNNLLTGAIPPTLANSTKLYWLNLSFNSFSGSIPMSLTRSVSLTYLDLQHNNLSGSIPDSWGGDATDRNRVFQLKSMALDGNLLSGIIPASLSKLSELQVVSLGHNRLNGGIPEEISRLSLLKTLDVSNNFLNGSMPQSFDSLRNLSVLNLSRNRFNGQIPANLGNISTLKQLDLSQNNLSGEIPASLAELEGLQSLNVSYNNLSGSVPSALAEKFSASSFVGNIQLCGFSGSTPCPSPVPSLEAPAPPPESSVSRHRKLSTKDIILIVAGALLLVLVIVFFVLLCCLIRKRAASKEKGGEAAAAAAAGAARPKKDVPPTSSEVEVGGGDAGGKLVHFDGKTVFTADDLLCATAEIMGKSTYGTVYKATLEDGNQVAVKRLREKITKSQKEFEAEVNILGKVRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLAAFLHGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDLELMRDASSIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETTPSSGDDGAGGGGGGGGGGPPSTSE 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5980111 5983459 + Cp4.1LG01g11680.1 Cpe01g01012 462325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01012 749 SUPERFAMILY Protein kinase-like (PK-like) 561 647 IPR011009 -
Cpe01g01012 749 Gene3D Ribonuclease Inhibitor 335 436 IPR032675 -
Cpe01g01012 749 ProSiteProfiles Protein kinase domain profile. 557 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g01012 749 Gene3D Transferase(Phosphotransferase) domain 1 638 731 - -
Cpe01g01012 749 MobiDBLite consensus disorder prediction 513 534 - -
Cpe01g01012 749 SMART LRR_typ_2 150 174 IPR003591 -
Cpe01g01012 749 SMART LRR_typ_2 247 270 IPR003591 -
Cpe01g01012 749 SMART LRR_typ_2 301 324 IPR003591 -
Cpe01g01012 749 SMART LRR_typ_2 397 420 IPR003591 -
Cpe01g01012 749 SMART LRR_typ_2 325 348 IPR003591 -
Cpe01g01012 749 SMART LRR_typ_2 349 373 IPR003591 -
Cpe01g01012 749 Pfam Leucine rich repeat 279 336 IPR001611 GO:0005515
Cpe01g01012 749 Pfam Leucine rich repeat 350 410 IPR001611 GO:0005515
Cpe01g01012 749 Pfam Leucine rich repeat 200 259 IPR001611 GO:0005515
Cpe01g01012 749 PRINTS Leucine-rich repeat signature 373 386 - -
Cpe01g01012 749 PRINTS Leucine-rich repeat signature 249 262 - -
Cpe01g01012 749 Pfam Protein tyrosine and serine/threonine kinase 560 646 IPR001245 GO:0004672|GO:0006468
Cpe01g01012 749 Pfam Leucine rich repeat N-terminal domain 85 124 IPR013210 -
Cpe01g01012 749 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 643 726 - -
Cpe01g01012 749 SUPERFAMILY L domain-like 123 419 - -
Cpe01g01012 749 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 348 645 - -
Cpe01g01012 749 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 643 726 - -
Cpe01g01012 749 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 18 357 - -
Cpe01g01012 749 Gene3D Phosphorylase Kinase; domain 1 563 634 - -
Cpe01g01012 749 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 18 357 - -
Cpe01g01012 749 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 348 645 - -
Cpe01g01012 749 MobiDBLite consensus disorder prediction 718 749 - -
Cpe01g01012 749 Gene3D Ribonuclease Inhibitor 233 334 IPR032675 -
Cpe01g01012 749 Gene3D Ribonuclease Inhibitor 82 232 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00100 Cpe01g01012 CCT
Cpe01g01012 Cpe01g00100 ECH
Cpe01g00100 Cpe01g01012 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01012 Cpe-Chr1:5980111 Cpe08g01239 Cpe-Chr8:8981149 2.67E-13 dispersed
Cpe12g01067 Cpe-Chr12:8904007 Cpe01g01012 Cpe-Chr1:5980111 2.08E-14 dispersed
Cpe01g00100 Cpe-Chr1:585262 Cpe01g01012 Cpe-Chr1:5980111 0 wgd
Cpe01g01012 Cpe-Chr1:5980111 Cpe03g00034 Cpe-Chr3:178075 1.72E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62139 PF07714 PK_Tyr_Ser-Thr 1.00E-13 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01012 - - csv:101214895 1009.59