Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01020 ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTCCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAGGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAAGTGCAAGAGTGAGAGACCCAGTTTATGGCTGCGTAGGGGCAATTTCGTACTTACAAAATCAAGTCTCACAGCTACAGATGCAATTGGCTGTCGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGACGACAAACCCCCCACTCTTCTACTCCCCCCGCCGTCATCGCCGCCGTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGATGCCATTTTTGGACATGACATCGTTTCTTAA 501 50.5 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDDKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6038761 6039759 - Cp4.1LG01g11400.1 Cpe01g01020 462333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01020 166 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Cpe01g01020 166 Coils Coil 85 105 - -
Cpe01g01020 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 122 - -
Cpe01g01020 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 2 122 - -
Cpe01g01020 166 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01020 Cpe-Chr1:6038761 Cpe05g01559 Cpe-Chr5:10711597 1.16E-58 dispersed
Cpe01g00107 Cpe-Chr1:624799 Cpe01g01020 Cpe-Chr1:6038761 1.36E-63 wgd
Cpe01g01020 Cpe-Chr1:6038761 Cpe05g00986 Cpe-Chr5:6418129 3.82E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48811 PF03195 LOB 3.70E-42 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01020 - - csv:101204801 320.087