Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01024 ATGGCTTCCCATTCCCCTAACCTCGAGTGTCGGATGTACGAAGCCAAGTACCCGGAGGTAGACATGGCCGTCATGATCCAGGTCAAGAACATCGCCGACATGGGCGCCTACGTCTCCCTCCTTGAGTACAACAACATCGAGGGTATGATTCTCTTTTCCGAGCTCTCTCGCCGTCGTATTCGTAGTGTTAGCAGTTTAATTAAGGTTGGACGAATCGAGCCTGTCATGGTCCTCAGGGTCGACAAGGAGAAGGGCTATATTGATTTGAGTAAGAGAAGGGTGTCTGAGGAGGATATTCAGGCCTGCGAGGAGAGGTATAACAAGAGCAAGCTTGTTCACTCTATAATGCGCCATGTTGCTGAGACTATGAACATTGATTTGGAGGACTTGTATGTCCATGTTGGCTGGCCTTTATACCGGAAATATGGTCACGGTTTTGAGGCATTCAAGATCATTGTAACTGACCCTGACTCGGTGTTGAACTCTCTTACCCGTGAAGTCAAGGAAGCTGGTCCCGACGGACAGGAGGTAACTAAGGTAGTTCCCGCAATGTCTGAGGATGTAAAAGATGCACTAATAAAGAATATTAGAAGAAGAATGACTCCCCAACCCTTGAAGGTTCGGGCTGATATTGAAATGAAGTGCTTCCAGTTTGATGGCGTTCTTCACATTAAGGAAGCAATGCGGAAAGCTGAAGCTGTTGGAAACGATGATTGCCCTGTTAAAATTAAATTGGTTGCTCCTCCACTCTACGTCCTTACTACCCAGACACTTGACAAGGAGCAAGGAATCACTGTTCTTGAGAAAGCGATCATTGCTTGCACCGAGGCGATCGAGCATCACAAGGGAAAGCTTGTGGTGAAGGAGGCACCTAGAGCGGTGAGTGAAAGAGATGACAAATTGCTTGCCGAGCACATGGCGAAGCTACGACAAGACAACGAAGAAATCAGTGGAGACGAGGATAGCGAGGAAGAGGAAGACACGGGGATGGGAGAAGTTGATGTCGAGAATGCAGGTTCCGGGATCACCGAGTAA 1035 48.12 MASHSPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMNIDLEDLYVHVGWPLYRKYGHGFEAFKIIVTDPDSVLNSLTREVKEAGPDGQEVTKVVPAMSEDVKDALIKNIRRRMTPQPLKVRADIEMKCFQFDGVLHIKEAMRKAEAVGNDDCPVKIKLVAPPLYVLTTQTLDKEQGITVLEKAIIACTEAIEHHKGKLVVKEAPRAVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEEDTGMGEVDVENAGSGITE 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6062702 6066580 + Cp4.1LG01g11480.1 Cpe01g01024 462337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01024 344 SUPERFAMILY Nucleic acid-binding proteins 10 92 IPR012340 -
Cpe01g01024 344 Pfam S1 RNA binding domain 18 92 IPR003029 GO:0003676
Cpe01g01024 344 ProSiteProfiles S1 domain profile. 21 92 IPR003029 GO:0003676
Cpe01g01024 344 PANTHER BNAC04G04870D PROTEIN 5 344 - -
Cpe01g01024 344 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 5 344 IPR011488 GO:0003723|GO:0003743
Cpe01g01024 344 Coils Coil 306 326 - -
Cpe01g01024 344 Gene3D EIF_2_alpha 205 327 IPR024055 -
Cpe01g01024 344 MobiDBLite consensus disorder prediction 308 344 - -
Cpe01g01024 344 CDD S1_IF2_alpha 18 93 IPR044126 GO:0003723
Cpe01g01024 344 Pfam Eukaryotic translation initiation factor 2 alpha subunit 130 260 IPR011488 GO:0003723|GO:0003743
Cpe01g01024 344 Gene3D - 6 94 IPR012340 -
Cpe01g01024 344 SMART S1_6 19 92 IPR022967 -
Cpe01g01024 344 SUPERFAMILY eIF2alpha middle domain-like 94 199 IPR024054 -
Cpe01g01024 344 SUPERFAMILY eIF-2-alpha, C-terminal domain 203 319 IPR024055 -
Cpe01g01024 344 Gene3D Translation initiation factor 2; subunit 1; domain 2 95 199 IPR024054 -
Cpe01g01024 344 MobiDBLite consensus disorder prediction 316 332 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00111 Cpe01g01024 CCT
Cpe01g01024 Cpe01g00111 ECH
Cpe01g00111 Cpe01g01024 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00111 Cpe-Chr1:641878 Cpe01g01024 Cpe-Chr1:6062702 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01024 K03237 - csv:101209681 635.18