Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g01024 | ATGGCTTCCCATTCCCCTAACCTCGAGTGTCGGATGTACGAAGCCAAGTACCCGGAGGTAGACATGGCCGTCATGATCCAGGTCAAGAACATCGCCGACATGGGCGCCTACGTCTCCCTCCTTGAGTACAACAACATCGAGGGTATGATTCTCTTTTCCGAGCTCTCTCGCCGTCGTATTCGTAGTGTTAGCAGTTTAATTAAGGTTGGACGAATCGAGCCTGTCATGGTCCTCAGGGTCGACAAGGAGAAGGGCTATATTGATTTGAGTAAGAGAAGGGTGTCTGAGGAGGATATTCAGGCCTGCGAGGAGAGGTATAACAAGAGCAAGCTTGTTCACTCTATAATGCGCCATGTTGCTGAGACTATGAACATTGATTTGGAGGACTTGTATGTCCATGTTGGCTGGCCTTTATACCGGAAATATGGTCACGGTTTTGAGGCATTCAAGATCATTGTAACTGACCCTGACTCGGTGTTGAACTCTCTTACCCGTGAAGTCAAGGAAGCTGGTCCCGACGGACAGGAGGTAACTAAGGTAGTTCCCGCAATGTCTGAGGATGTAAAAGATGCACTAATAAAGAATATTAGAAGAAGAATGACTCCCCAACCCTTGAAGGTTCGGGCTGATATTGAAATGAAGTGCTTCCAGTTTGATGGCGTTCTTCACATTAAGGAAGCAATGCGGAAAGCTGAAGCTGTTGGAAACGATGATTGCCCTGTTAAAATTAAATTGGTTGCTCCTCCACTCTACGTCCTTACTACCCAGACACTTGACAAGGAGCAAGGAATCACTGTTCTTGAGAAAGCGATCATTGCTTGCACCGAGGCGATCGAGCATCACAAGGGAAAGCTTGTGGTGAAGGAGGCACCTAGAGCGGTGAGTGAAAGAGATGACAAATTGCTTGCCGAGCACATGGCGAAGCTACGACAAGACAACGAAGAAATCAGTGGAGACGAGGATAGCGAGGAAGAGGAAGACACGGGGATGGGAGAAGTTGATGTCGAGAATGCAGGTTCCGGGATCACCGAGTAA | 1035 | 48.12 | MASHSPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMNIDLEDLYVHVGWPLYRKYGHGFEAFKIIVTDPDSVLNSLTREVKEAGPDGQEVTKVVPAMSEDVKDALIKNIRRRMTPQPLKVRADIEMKCFQFDGVLHIKEAMRKAEAVGNDDCPVKIKLVAPPLYVLTTQTLDKEQGITVLEKAIIACTEAIEHHKGKLVVKEAPRAVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEEDTGMGEVDVENAGSGITE | 344 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 6062702 | 6066580 | + | Cp4.1LG01g11480.1 | Cpe01g01024 | 462337 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g01024 | 344 | SUPERFAMILY | Nucleic acid-binding proteins | 10 | 92 | IPR012340 | - | |
Cpe01g01024 | 344 | Pfam | S1 RNA binding domain | 18 | 92 | IPR003029 | GO:0003676 | |
Cpe01g01024 | 344 | ProSiteProfiles | S1 domain profile. | 21 | 92 | IPR003029 | GO:0003676 | |
Cpe01g01024 | 344 | PANTHER | BNAC04G04870D PROTEIN | 5 | 344 | - | - | |
Cpe01g01024 | 344 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 | 5 | 344 | IPR011488 | GO:0003723|GO:0003743 | |
Cpe01g01024 | 344 | Coils | Coil | 306 | 326 | - | - | |
Cpe01g01024 | 344 | Gene3D | EIF_2_alpha | 205 | 327 | IPR024055 | - | |
Cpe01g01024 | 344 | MobiDBLite | consensus disorder prediction | 308 | 344 | - | - | |
Cpe01g01024 | 344 | CDD | S1_IF2_alpha | 18 | 93 | IPR044126 | GO:0003723 | |
Cpe01g01024 | 344 | Pfam | Eukaryotic translation initiation factor 2 alpha subunit | 130 | 260 | IPR011488 | GO:0003723|GO:0003743 | |
Cpe01g01024 | 344 | Gene3D | - | 6 | 94 | IPR012340 | - | |
Cpe01g01024 | 344 | SMART | S1_6 | 19 | 92 | IPR022967 | - | |
Cpe01g01024 | 344 | SUPERFAMILY | eIF2alpha middle domain-like | 94 | 199 | IPR024054 | - | |
Cpe01g01024 | 344 | SUPERFAMILY | eIF-2-alpha, C-terminal domain | 203 | 319 | IPR024055 | - | |
Cpe01g01024 | 344 | Gene3D | Translation initiation factor 2; subunit 1; domain 2 | 95 | 199 | IPR024054 | - | |
Cpe01g01024 | 344 | MobiDBLite | consensus disorder prediction | 316 | 332 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe01g00111 | Cpe01g01024 | CCT | |
Cpe01g01024 | Cpe01g00111 | ECH | |
Cpe01g00111 | Cpe01g01024 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00111 | Cpe-Chr1:641878 | Cpe01g01024 | Cpe-Chr1:6062702 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g01024 | K03237 | - | csv:101209681 | 635.18 |