Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01032 ATGTGCAGTGGCTCAAAGAATAAAGTTGCTTTCTCGAATTCCGCCATGGAATCTAAGTTTCAGAAGCTTAGAGATGGAGCTTTATTCTCTGCGAATTCGATCTTGCTTGAACTATCAGCCTCTGATGATGTAGATGGGTTCAAGAGAGAGGTGGAAGAAAGGGATTTGGATGTTGATGAACCAAGCTGCTGGTATGGAAGAGGAATTGGGTCAAAGAAGATGGGTTTTGAAGAAAGAACTCCACTTATGATCGCTGCTATGTATGGAAGCTCTAAGGTTGTCAAATACTTAATTGAGACAGGCAAGGTTGATATCAACAGGGCTTGTGGATCAGATATGACCACTGCCCTTCACTGTGCCTCTGCTGGTGGCTCTGGTTCTTCCCTTGAAACCATCAAGCTCTTGCTCGACGGATCGGCTGACGTTGATTGCGTCGATGCGAACGGGAGAAAACCTGTTGATTTGATTGTTTCAGCTTGCAGGATGGTGTGTTATTCAGGAAGGAAAGCTATGGAGATGTTGTTGAGAGGAGATGGTATGGCTGGGGTAGGTGATCTGAGCCTTTTCCTAGAAGAAGACCAGCAGAAGATCTCAGCTTCCCTGTCTGCGAAAGAAGGAAGTGACAAGAAAGAGTATCCCGTTGATATATCGCTGCCCGACATCAACAGCGGGATATATGGCACTGATGATTTCAGGATGTATACTTTCAAAGTGAAGCCTTGTTCGAGGGCGTATTCGCACGATTGGACCGAGTGTCCTTTCGTTCATCCTGGCGAGAATGCTAGGCGTAGAGACCCCAAGAAGTACCCTTATAGTTGCGTCCCGTGCCCTGAATTCCGAAAGGGGGCTTGTCCTAAGGGAGATTCCTGTGAGTATGCACATGGTGTCTTTGAGTCTTGGCTCCACCCTGCTCAATACCGAACCCGGCTCTGCAAGGATGAGACTGGCTGCACAAGGAAGGTCTGCTTCTTTGCTCACAGACCTGATGAGTTGCGCCCTGTATATGCATCGACTGGCTCAGGCATGCCTTCGCCTAGGTCTCTTTCAAGCAGTGCTGCAGATATGTCTACCATGAGCCCGTTGGCTCTTGGTTCATCGTCGTTGTCGTTGCCGACTGCTTCAACGCCTCCCATGTCTCCCTTAGCATCGGTGTCTTCCCCTAAAAATGGGAACTTGTGGCAGAACAAGATTAACCTTACTCCTCCTGCTCTGCAGCTCCCTGGTAGTCGGTTGAAGGCGACCTTGAGTGCAAGAGATTTGGATTTAGAGATGGAATTACTTGGATTAGAAAAGAACGTGAGCCAAATGCAACATCAACAACAGTTGATCGACGAGATATCCCGGCTCTCCGCTCCTTCTTACTGGAGTGCAGACATAAGCAGGAGCGCAGAGTTGAAGCCATCAAACCTTGATGACATGTTTGGATCATTAGATTCTTCCTTGTTGTCTCAGTTGCAGGGCACGTCGCTAAAAACGCCAATCTCGGCTCAAGTTCAATCTCCAACCGGGCTGCAGATGCGCCAAAACATGAACCAACTCCGTGCGAGTTACCCAGCTAACTTATCATCCTCACCTGTAAAGAAACCCTCTTCATTTGGCTTTGATTCATCAAGTGCAGTGGCAGCTGCTGTGATGAACTCAAGGTCTGCAGCCTTTGCAAAACGAAGCCAGAGTTTCATCGATCGAGCTGCAGTGACCCGCCATCCTGGGGTTACTGGAGCTGCAAATTCTGCATCTACAATGTCTTCCCATCTCTCAGATTGGAACTCGCCCGATGGCAAACTAGACTGGGGAATGCACGGCAACGATCTCAACAAACTCAAGAAATCTGCCTCGTTCGGGATCCGAAACAACAGCATGGGAACCCCCACGTTCGCTTCACCAGTAGAGGAGCCTGATGTCTCTTGGGTTAACTCCTTGGTGAAAGATGTTCCCTCGGACAGGTTCGGAATGTTCGGTGCGGAGAAACGAGCATACAACCTCAAAAGAGACATCAACGAGATGATCCCATCCTGGATGGAGCAGCAGTTGTATGCAGAGCAGGAGCAGACAGTGGCATAA 2061 48.81 MCSGSKNKVAFSNSAMESKFQKLRDGALFSANSILLELSASDDVDGFKREVEERDLDVDEPSCWYGRGIGSKKMGFEERTPLMIAAMYGSSKVVKYLIETGKVDINRACGSDMTTALHCASAGGSGSSLETIKLLLDGSADVDCVDANGRKPVDLIVSACRMVCYSGRKAMEMLLRGDGMAGVGDLSLFLEEDQQKISASLSAKEGSDKKEYPVDISLPDINSGIYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGACPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHRPDELRPVYASTGSGMPSPRSLSSSAADMSTMSPLALGSSSLSLPTASTPPMSPLASVSSPKNGNLWQNKINLTPPALQLPGSRLKATLSARDLDLEMELLGLEKNVSQMQHQQQLIDEISRLSAPSYWSADISRSAELKPSNLDDMFGSLDSSLLSQLQGTSLKTPISAQVQSPTGLQMRQNMNQLRASYPANLSSSPVKKPSSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVTRHPGVTGAANSASTMSSHLSDWNSPDGKLDWGMHGNDLNKLKKSASFGIRNNSMGTPTFASPVEEPDVSWVNSLVKDVPSDRFGMFGAEKRAYNLKRDINEMIPSWMEQQLYAEQEQTVA 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6109429 6111489 - Cp4.1LG01g11260.1 Cpe01g01032 462345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01032 686 PANTHER UNKEMPT FAMILY MEMBER 23 684 IPR045234 -
Cpe01g01032 686 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Cpe01g01032 686 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515
Cpe01g01032 686 Gene3D - 271 333 - -
Cpe01g01032 686 SMART ANK_2a 112 144 IPR002110 GO:0005515
Cpe01g01032 686 SMART ANK_2a 77 107 IPR002110 GO:0005515
Cpe01g01032 686 Pfam Ankyrin repeats (3 copies) 75 144 IPR002110 GO:0005515
Cpe01g01032 686 MobiDBLite consensus disorder prediction 334 355 - -
Cpe01g01032 686 MobiDBLite consensus disorder prediction 340 355 - -
Cpe01g01032 686 SUPERFAMILY Ankyrin repeat 68 159 IPR036770 -
Cpe01g01032 686 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 23 684 - -
Cpe01g01032 686 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Cpe01g01032 686 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Cpe01g01032 686 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Cpe01g01032 686 Gene3D - 31 172 IPR036770 -
Cpe01g01032 686 ProSiteProfiles Ankyrin repeat region circular profile. 77 101 - -
Cpe01g01032 686 ProSiteProfiles Ankyrin repeat profile. 77 101 IPR002110 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00128 Cpe01g01032 CCT
Cpe01g01032 Cpe01g00128 ECH
Cpe01g00128 Cpe01g01032 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01032 Cpe-Chr1:6109429 Cpe08g01381 Cpe-Chr8:9920910 5.85E-157 dispersed
Cpe01g00128 Cpe-Chr1:738386 Cpe01g01032 Cpe-Chr1:6109429 0 wgd
Cpe01g01032 Cpe-Chr1:6109429 Cpe05g00970 Cpe-Chr5:6326093 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48812 PF12796 Ank_2 1.20E-09 CL0465 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01032 - - csv:101203102 1164.44