Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01035 ATGGCGTCAATCTCTTCCAGCCTTCGCACCGTCGAAGATATCTTCAAGGATTACAACGCTCGACGCACAGGCCTTGTGCGAGCCCTCACTTATGATGTTGATATGTTCTACTCGCTTTGCGATCCTGTTCCATCCGAGCTCCCTGAGCCCGCGTTGGGGATCAATTTTGCAAGAGATGGGATGAAGCGCAGAGACTGGCTTTCGCTGGTGGCTGTGCACAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCTCGACTCAACCGTAATGAGCGGAAGCGGCTGTTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGACAGTGGAAGTAAATCCAGAAACAGCACAAAGAGATCACTGGACGGGTCGATTAGAAACAGCAATCCAAAGCTACTGGATGAGAGTTATGTAGAGGAGGAAGATGAGCATGGTGATACTCTGTGTGGGAGCTGTGGAGGGAACTACAACGCAGATGAATTTTGGATTGGATGTGACATATGCGAGAGGTGGTTCCATGGAAAATGTGTGAGGATAACACCAGCTAAGGCAGACAATATCAAGCAATACAAATGCCCCTCTTGCAGCACAAAGAGAGGAAGACAGTAG 657 47.79 MASISSSLRTVEDIFKDYNARRTGLVRALTYDVDMFYSLCDPVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSLDGSIRNSNPKLLDESYVEEEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKADNIKQYKCPSCSTKRGRQ 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6128234 6135451 - Cp4.1LG01g11270.1 Cpe01g01035 462348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01035 218 PANTHER CPG BINDING PROTEIN 43 218 IPR045104 GO:0006355|GO:0042393
Cpe01g01035 218 MobiDBLite consensus disorder prediction 118 145 - -
Cpe01g01035 218 CDD PHD_AL_plant 164 214 IPR044104 -
Cpe01g01035 218 PANTHER CPG BINDING PROTEIN 1 42 IPR045104 GO:0006355|GO:0042393
Cpe01g01035 218 ProSiteProfiles Zinc finger PHD-type profile. 162 214 IPR019787 -
Cpe01g01035 218 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 1 42 - -
Cpe01g01035 218 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 43 218 - -
Cpe01g01035 218 SMART PHD_3 164 212 IPR001965 -
Cpe01g01035 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 213 IPR013083 -
Cpe01g01035 218 ProSitePatterns Zinc finger PHD-type signature. 165 211 IPR019786 -
Cpe01g01035 218 SUPERFAMILY FYVE/PHD zinc finger 155 215 IPR011011 -
Cpe01g01035 218 MobiDBLite consensus disorder prediction 126 145 - -
Cpe01g01035 218 Pfam Alfin 43 112 IPR021998 GO:0006355|GO:0042393
Cpe01g01035 218 Pfam Alfin 10 42 IPR021998 GO:0006355|GO:0042393
Cpe01g01035 218 Pfam PHD-finger 165 213 IPR019787 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00130 Cpe01g01035 CCT
Cpe01g01035 Cpe01g00130 ECH
Cpe01g00130 Cpe01g01035 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01035 Cpe-Chr1:6128234 Cpe17g00469 Cpe-Chr17:3498302 4.35E-89 dispersed
Cpe01g00130 Cpe-Chr1:750940 Cpe01g01035 Cpe-Chr1:6128234 1.44E-146 wgd
Cpe01g01035 Cpe-Chr1:6128234 Cpe03g00051 Cpe-Chr3:277286 1.08E-111 wgd
Cpe01g01035 Cpe-Chr1:6128234 Cpe08g01225 Cpe-Chr8:8916056 2.67E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48813 PF12165 Alfin 9.80E-36 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01035 - - csv:101211934 420.239