Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01046 ATGGCTTCCGTATATCGTGATCGGACGTCGGAGTTTTGGTCACTATCGGAGACGCTGAAGAAGATCGGCGGAGCCACAGCCGCCGTCAATTTAGCTCAAAATGAACCATCGGTGTCCACGCCCTCCAGATCGCCGGCTATTTTACGATCGGAATTCAGCAAGAAAGCCTCGCGTATTGGATTGGGAATCCAAGAAACCTCTCAGAAGATTGTGAGGCTTGCTCAGTTGGCAAAAAGATCATCAATGTTTGATGATCCAATCAGGGAAATTCAGGAAATGACTGCTTTGATTAAGAATGATATTACATCCTTGAATGTAGCTATCACAGATTTGCAAACAATCCAGAACATGGAGATAGCAGAGGGGAATTATTCAGAGGATAGAGTTGTTCATTCAACAGCTGTCTGTGATGACCTGAAGAGCAGACTTATGGGAGCTACAAAACGGCTTCAAGATGTGCTAACAATAAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAGACAAATATTTTCTGCAAATGCAACCAGAGAAAGTCCTTTTCAAAATCAAGCCAAAACTGTAACGCAACCTCCACCTTGGTCAAGTAACACATCTGGAAGTGCCCAATCATCTTTATTATCGTCAAATGGAGCTCAAGCTGGGGGTCAATTGAGACGAAGGTTAGCTGTTGAGAACACCCCATCACAGCAAATGGAGTTGTCAATGTTACAGCAGGTGGTTCCTAGGCAGGAAAATTATTCCCAAAGTCGTGCCGTTGCTCTCCATAATGTGGAATCCACCATTTCAGAACTCAGTGGAATTTTTACACATCTTGCCACAATGGTAGCACATCAAGGAGAACTTGCTATCAGGATTGATGACAATATGGATGAATCATTGGCAAACGTAGAAGGTGCTCGGAGTGCTCTTTTAAGGCATCTTAACCAGATATCATCAAATAGATGGCTTCTTATAAAACTATTTGCCATTTTGATATTCTTCTTGATGCTCTTTATTTTCTTGGCATAA 1011 42.63 MASVYRDRTSEFWSLSETLKKIGGATAAVNLAQNEPSVSTPSRSPAILRSEFSKKASRIGLGIQETSQKIVRLAQLAKRSSMFDDPIREIQEMTALIKNDITSLNVAITDLQTIQNMEIAEGNYSEDRVVHSTAVCDDLKSRLMGATKRLQDVLTIRTENIKANESRRQIFSANATRESPFQNQAKTVTQPPPWSSNTSGSAQSSLLSSNGAQAGGQLRRRLAVENTPSQQMELSMLQQVVPRQENYSQSRAVALHNVESTISELSGIFTHLATMVAHQGELAIRIDDNMDESLANVEGARSALLRHLNQISSNRWLLIKLFAILIFFLMLFIFLA 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6186927 6189761 - Cp4.1LG01g11060.1 Cpe01g01046 462359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01046 336 CDD SNARE_syntaxin5 248 333 - -
Cpe01g01046 336 Pfam SNARE domain 282 333 IPR000727 -
Cpe01g01046 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 307 IPR000727 -
Cpe01g01046 336 ProSitePatterns Syntaxin / epimorphin family signature. 251 290 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cpe01g01046 336 SMART tSNARE_6 240 307 IPR000727 -
Cpe01g01046 336 Gene3D - 49 300 - -
Cpe01g01046 336 PANTHER SYNTAXIN-31 4 335 - -
Cpe01g01046 336 SUPERFAMILY t-snare proteins 49 300 IPR010989 GO:0016020|GO:0016192
Cpe01g01046 336 MobiDBLite consensus disorder prediction 173 211 - -
Cpe01g01046 336 PANTHER SYNTAXIN 4 335 IPR045242 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00138 Cpe01g01046 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01046 Cpe-Chr1:6186927 Cpe11g00567 Cpe-Chr11:3361050 1.15E-92 dispersed
Cpe01g00138 Cpe-Chr1:799506 Cpe01g01046 Cpe-Chr1:6186927 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01046 K08490 - csv:101213786 530.791