Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01049 ATGGAGGGAAAGGAGGAGGATGTCCGATTGGGAGCAAACAAGTTCACTGAGAGGCAGCCGATTGGGACAGCGGCGCAGAGCCAAGACGACGGCAAGGACTATAAGGAGCCTCCGCCGGCACCTCTGTTTGAGCCAGGGGAGCTCACTTCATGGTCCTTCTACAGAGCCGGAATCGCCGAGTTTTTAGCCACTTTCCTCTTCCTCTACATCACTGTTTTGACCGTCATGGGCGTCGTCCGCTCCAACGAAATCAACGGCAATACCTGTAAGACTGTCGGGATTCAGGGGATTGCTTGGGCTTTTGGTGGTATGATTTTTGCTCTGGTTTACTGTACCGCTGGAATCTCTGGTGGCCACATTAACCCGGCGGTGACTTTCGGGCTGTTTCTGGCGAGGAAGCTATCCTTGACCAGGGCGATTTTCTACATAGTGATGCAGTGTCTCGGCGCCATCTGCGGTGCCGGCGTGGTAAAGGGGTTCCAACCCAAGCCGTACGACAGGCTCGGCGGTGGAGCTAACATGGTGAGCAAGGGGTACACCAAAGGGGACGGGCTTGGCGCTGAGATTGTGGGCACATTTATCCTTGTTTACACCGTCTTCTCCGCCACTGACGCCAAACGAAGCGCCAGAGACTCGCATGTTCCGATTTTGGCGCCGCTACCAATTGGGTTCGCAGTGTTCCTAGTCCACTTGGCCACCATCCCGATCACCGGCACCGGCATCAACCCAGCTCGGAGTTTGGGAGCTGCCATCATCTACAACAACGAGAAAGCCTGGGATGACCACTGGATTTTCTGGGTGGGACCCTTCATCGGAGCAGCATTGGCAGCTTTATACCATCAAGTGGTGATCAGGGCCATTCCCTTCAAGTCCAAGTGA 879 55.29 MEGKEEDVRLGANKFTERQPIGTAAQSQDDGKDYKEPPPAPLFEPGELTSWSFYRAGIAEFLATFLFLYITVLTVMGVVRSNEINGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPKPYDRLGGGANMVSKGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNNEKAWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6196921 6198443 + Cp4.1LG01g11190.1 Cpe01g01049 462362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01049 292 PANTHER AQUAPORIN PIP1-5-RELATED 1 292 - -
Cpe01g01049 292 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g01049 292 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Cpe01g01049 292 TIGRFAM MIP: MIP family channel proteins 59 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g01049 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 292 IPR034294 -
Cpe01g01049 292 Gene3D Glycerol uptake facilitator protein. 40 291 IPR023271 -
Cpe01g01049 292 MobiDBLite consensus disorder prediction 1 39 - -
Cpe01g01049 292 CDD MIP 55 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g01049 292 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g01049 292 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g01049 292 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g01049 292 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g01049 292 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g01049 292 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g01049 292 SUPERFAMILY Aquaporin-like 47 285 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00140 Cpe01g01049 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01049 Cpe-Chr1:6196921 Cpe01g01051 Cpe-Chr1:6202540 0 dispersed
Cpe01g01049 Cpe-Chr1:6196921 Cpe01g01050 Cpe-Chr1:6199962 3.09E-14 tandem
Cpe16g00292 Cpe-Chr16:4908103 Cpe01g01049 Cpe-Chr1:6196921 1.76E-21 transposed
Cpe01g00140 Cpe-Chr1:810724 Cpe01g01049 Cpe-Chr1:6196921 0 wgd
Cpe01g01049 Cpe-Chr1:6196921 Cpe08g01215 Cpe-Chr8:8878269 4.48E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01049 K09872 - csv:101214512 570.466