Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01050 ATGGAGGGAAAGGAGGAAGATGTCCGATTGGGAGCCAACAGGTTCACTGAGAGGCAGCCGATTGGGACAGCAGCACAGAGCCAAGACGACGGCAAGGACTACCAAGAGCCTCCACCGGCGCCTCTGTTCGAGCCGGACGAGCTCACTTCATGGTCCTTCTACAGAGCCGGAATCGCCGAGTTTTTAGCCACTTTCCTCTTCCTCTACATCACTGTTTTGACCGTCATGGGCGTCGTCCGCTCCAACGAAATCAACGGCAATACCTGTAAGACTGTCGGGATTCAGGGGATTGCTTGGGCTTTTGGTGGTATGATTTTTGCTCTGGTTTACTGTACCGCTGGAATCTCTGGTGGCCACATTAACCCGGCGTGGATTTTCTGGGTGGGACCATTCATCGGAGCAGCATTGGCAGCTTTATACCATCAAGTGGTGATCAGAGCCATTCCCTTCAAATCCAAGTGA 462 53.03 MEGKEEDVRLGANRFTERQPIGTAAQSQDDGKDYQEPPPAPLFEPDELTSWSFYRAGIAEFLATFLFLYITVLTVMGVVRSNEINGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAWIFWVGPFIGAALAALYHQVVIRAIPFKSK 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6199962 6201214 - Cp4.1LG01g11050.1 Cpe01g01050 462363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01050 153 SUPERFAMILY Aquaporin-like 47 123 IPR023271 -
Cpe01g01050 153 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 123 IPR034294 -
Cpe01g01050 153 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 124 153 IPR034294 -
Cpe01g01050 153 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g01050 153 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g01050 153 SUPERFAMILY Aquaporin-like 124 146 IPR023271 -
Cpe01g01050 153 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 124 153 - -
Cpe01g01050 153 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 1 123 - -
Cpe01g01050 153 Pfam Major intrinsic protein 47 123 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g01050 153 MobiDBLite consensus disorder prediction 1 39 - -
Cpe01g01050 153 Gene3D Glycerol uptake facilitator protein. 40 123 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01050 Cpe-Chr1:6199962 Cpe01g00140 Cpe-Chr1:810724 4.27E-83 dispersed
Cpe01g01049 Cpe-Chr1:6196921 Cpe01g01050 Cpe-Chr1:6199962 3.09E-14 tandem
Cpe01g01050 Cpe-Chr1:6199962 Cpe01g01051 Cpe-Chr1:6202540 2.79E-14 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01050 K09872 - csv:101214512 239.965