Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01068 ATGGATGAAGTTGTTTCCGTGTTTCCGAGTGAAAAGAAACAGCTTCATACGACAAGATCATGGGATTTTATGGGTTTCTTCCAACAAGCTCGAAGATCGAGCTTGGAGACCGATTTGGTCATCGGAATGTTGGATACTGGGATTTGGCCGGAATCTGAAAGCTTTTCCGATGAAGGGTTTGGTCCACCGCCGCCAAAATGGAAAGGCGAATGCCAACCCGCTTCTAACTTCACCTGCAACAATAAAATAATCGGAGCTCGATTCTTCCGGAGCGAGCCTCTCGGCGAAGGCGATATTCTTTCTCCCAGGGATACAGAAGGCCATGGAACCCACACCTCATCTACTGCCGGCGGCAATTTGGTCTCCGGCGCCAGCCTCTTCGGCCTTGGTCTCGGCACCGCACGGGGTGGCACTCCCTCTGCCCGCATCGCCGTCTACAAGATCTGCTGGTCCGATGGTTGCTTCGACGCCGATATCCTCGCGGCTTTCGACAATGCAATCGCCGATGGCGTGGATATCATCTCTCTTTCCGTCGGAGGCTTTATTGCCAAGGATTACTTCAACGATTCAATTGCGATTGGGGCTTTTCACGCCATGAAGAATGGGATTCTGACTTCAAATTCCGGTGGGAACTCTGGCCCTAGCCTTGGCAGTATCACGAATGTTTCTCCATGGTCGCTATCGGTGGCTGCTAGTACCATCGATAGGAAGTTTGTGACCAATGTGAAATTGGGTAATGGAGAATCTTCTCAGGGGATCTCTGTGAACACCTTCCAACTTGGAGATAAGTTGATTCCACTTATATATGCTGGTGATGCTCCTAATACAACTGCCGGTTTCAATGAATCATTATCAAGGTTCTGCTTCCCAGGGTCTTTGGACGTGAACCAAGTTGAGGGAAAGATTGTTCTTTGCGATGAGATTGGTGATGGGGAGGGAGCTCTGAGTAGCGGTGCGGTTGGTACAATAATGCAAGATGGTGGTCTCCAAGATGCCGCCTTTCTTTTCCCCCTGCCCGCTTCCGTGTTAGACTTGAACGCTGGAAACAATGTTTTCCAGTACCTGAGATCAACCAGCAATCCGGAAGCCACCATAGAAAAGAGTACCACAATTGAGGATATGTCAGCTCCATCTGTTGTTTCCTTCTCATCAAGGGGTCCTAACCTAATTACACTAGACATTCTCAAGCCTGATTTGGCAGCACCAGGAGTAGATATAGTAGCATCTTGGTCTGAAGGTACAACAATTGGAGGATTAGAAGGGGATAACCGAGTATCTCCATTTAACATAATCTCTGGCACATCCATGGCTTGCCCACATGCGACAGGAGCCGCTGCCTATGTCAAATCATTCCACCCAACTTGGTCTCCAGCTGCTATTAAGTCTGCACTTATGACAACAGCTTTTCCCATGGCTCCAAAGTTAAACACGGATGCTGAGTTTGCATATGGAGCAGGTCACATAAACCCAGTGAATGCCATAAACCCCGGTTTAGTGTATGATGCAGAGGAGATTGATTACATAAAGTTCTTATGTGGGCAAGGATATAGTACTCAAAATCTTCGCCTTGTTACCGGAGACGAAAGCAACTGCTCAGATGTTACAAAAACAGCTGCATCAGATCTAAATTATCCGTCTTTTGGACTATTAATGAAGTCCCAAAAATTGAATACTCGTGTCTACCACAGGACTGTCACAAACGTGGGGGTGCCAGTGTCGACATATAAAGCAGTTATTCGAGCTCCGCCTGGGCTGGAAGTTACAGTACGTCCTGCTACTCTTTCTTTCCGTTCTCTTGGACAAAAGATGTCGTTCACTGTGAGGGTTAAAGCAAAGACTGGTGGGAATATTCTTTCTGGTAGCTTAAGCTGGGAGGATGGAGTGCATCTGGTGAGGAGCCCCATTGTTGCATTTGCTATTCCATCATGA 1929 47.69 MDEVVSVFPSEKKQLHTTRSWDFMGFFQQARRSSLETDLVIGMLDTGIWPESESFSDEGFGPPPPKWKGECQPASNFTCNNKIIGARFFRSEPLGEGDILSPRDTEGHGTHTSSTAGGNLVSGASLFGLGLGTARGGTPSARIAVYKICWSDGCFDADILAAFDNAIADGVDIISLSVGGFIAKDYFNDSIAIGAFHAMKNGILTSNSGGNSGPSLGSITNVSPWSLSVAASTIDRKFVTNVKLGNGESSQGISVNTFQLGDKLIPLIYAGDAPNTTAGFNESLSRFCFPGSLDVNQVEGKIVLCDEIGDGEGALSSGAVGTIMQDGGLQDAAFLFPLPASVLDLNAGNNVFQYLRSTSNPEATIEKSTTIEDMSAPSVVSFSSRGPNLITLDILKPDLAAPGVDIVASWSEGTTIGGLEGDNRVSPFNIISGTSMACPHATGAAAYVKSFHPTWSPAAIKSALMTTAFPMAPKLNTDAEFAYGAGHINPVNAINPGLVYDAEEIDYIKFLCGQGYSTQNLRLVTGDESNCSDVTKTAASDLNYPSFGLLMKSQKLNTRVYHRTVTNVGVPVSTYKAVIRAPPGLEVTVRPATLSFRSLGQKMSFTVRVKAKTGGNILSGSLSWEDGVHLVRSPIVAFAIPS 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6290743 6293609 - Cp4.1LG01g10880.1 Cpe01g01068 462381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01068 642 PRINTS Subtilisin serine protease family (S8) signature 36 55 IPR015500 -
Cpe01g01068 642 PRINTS Subtilisin serine protease family (S8) signature 104 117 IPR015500 -
Cpe01g01068 642 PRINTS Subtilisin serine protease family (S8) signature 432 448 IPR015500 -
Cpe01g01068 642 Pfam Fibronectin type-III domain 541 636 IPR041469 -
Cpe01g01068 642 Gene3D - 511 639 - -
Cpe01g01068 642 Gene3D Peptidase S8/S53 domain 38 507 IPR036852 GO:0004252|GO:0006508
Cpe01g01068 642 Gene3D - 235 372 - -
Cpe01g01068 642 SUPERFAMILY Subtilisin-like 21 495 IPR036852 GO:0004252|GO:0006508
Cpe01g01068 642 CDD Peptidases_S8_3 13 468 IPR034197 -
Cpe01g01068 642 ProSitePatterns Serine proteases, subtilase family, serine active site. 433 443 IPR023828 -
Cpe01g01068 642 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 3 639 IPR045051 -
Cpe01g01068 642 Pfam Subtilase family 38 486 IPR000209 GO:0006508|GO:0008236
Cpe01g01068 642 CDD PA_subtilisin_like 241 365 - -
Cpe01g01068 642 ProSiteProfiles Serine proteases, subtilase domain profile. 20 494 - -
Cpe01g01068 642 PANTHER PUTATIVE-RELATED 3 639 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00157 Cpe01g01068 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00907 Cpe-Chr1:5341879 Cpe01g01068 Cpe-Chr1:6290743 0 dispersed
Cpe01g01068 Cpe-Chr1:6290743 Cpe01g01071 Cpe-Chr1:6304861 1.63E-170 dispersed
Cpe01g01068 Cpe-Chr1:6290743 Cpe01g01069 Cpe-Chr1:6297757 7.99E-24 tandem
Cpe01g00482 Cpe-Chr1:2781043 Cpe01g01068 Cpe-Chr1:6290743 0 transposed
Cpe01g01287 Cpe-Chr1:7751256 Cpe01g01068 Cpe-Chr1:6290743 0 transposed
Cpe13g00241 Cpe-Chr13:1880647 Cpe01g01068 Cpe-Chr1:6290743 0 transposed
Cpe13g00268 Cpe-Chr13:2081702 Cpe01g01068 Cpe-Chr1:6290743 4.18E-75 transposed
Cpe01g00157 Cpe-Chr1:890439 Cpe01g01068 Cpe-Chr1:6290743 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01068 - - cmos:111458206 1243.41