Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01079 ATGGCTAATCGATGGTGGGCTGAAAACATACCCACCACCACGGACAGCAGCACCAGCAACCCTTATTCGACTCCATTAAAGCAAAGCATAGAAGCTGTCGATGAAGAGAATAACTCCGGCAGCCATGAGAGAGCCGAACCAGGCACCAGCTCCAGCACGCGCCGTCCACGTGGTCGGCCACCGGGATCCAAAAACAAGCCGAAGCCGCCAGTGGTGGTCACGAAAGAGAGCCCCGATGCTCTCCGGAGCCACGTTTTAGAAATCGGCAGCGGCAGCGATATCGTCGAAAGCATCTCAAACTTCGCCCAACGCCGGCAGCGAGGAGTTTCGGTTCTCAGTGGAAATGGGGTCGTCGCCAATGTCACTCTCCGGCATCCGGCAGCCCCTAGCGGTGTTATTACGCTACAGGGACGATTCGACATACTGTCGCTCTCTGGTGCATTTTTGCCTGCCCCAGCTCCACCGGGAGCTACTGGGTTAACTGTCTACTTGGCTGGCGGGCAGGGGCAAGTTGTTGGTGGCATTGTTGTCGGTGCCCTCGTTGCAACAGGTCCAGTCATCGTTATCGCTGCCACTTTCACCAACGCTACATTCGAACGGCTACCACTCGAGGAGGAGGAGGCAGCTGCTGGAGACAAGTCTGGAACAAGCCAGAACAATTCAACTTCTCAGAGCATGGGGGATCAACAGCAGCCTTCAATGGGCGTTTACAATATGGCTTCAAATTTGGTGCCAAATGGTCAGGTTTCTTCACATGATGTGTTTTGGAGTCCTCCTAGAGCCCCACCACCATTTTAA 798 54.76 MANRWWAENIPTTTDSSTSNPYSTPLKQSIEAVDEENNSGSHERAEPGTSSSTRRPRGRPPGSKNKPKPPVVVTKESPDALRSHVLEIGSGSDIVESISNFAQRRQRGVSVLSGNGVVANVTLRHPAAPSGVITLQGRFDILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGIVVGALVATGPVIVIAATFTNATFERLPLEEEEAAAGDKSGTSQNNSTSQSMGDQQQPSMGVYNMASNLVPNGQVSSHDVFWSPPRAPPPF 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6366461 6367258 + Cp4.1LG01g10920.1 Cpe01g01079 462392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01079 265 MobiDBLite consensus disorder prediction 1 35 - -
Cpe01g01079 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 264 IPR014476 GO:0003680
Cpe01g01079 265 MobiDBLite consensus disorder prediction 205 265 - -
Cpe01g01079 265 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 195 IPR005175 -
Cpe01g01079 265 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 208 - -
Cpe01g01079 265 MobiDBLite consensus disorder prediction 1 78 - -
Cpe01g01079 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 264 - -
Cpe01g01079 265 MobiDBLite consensus disorder prediction 212 253 - -
Cpe01g01079 265 MobiDBLite consensus disorder prediction 43 58 - -
Cpe01g01079 265 PIRSF ESCAROLA 7 263 IPR014476 GO:0003680
Cpe01g01079 265 Gene3D - 81 210 - -
Cpe01g01079 265 CDD DUF296 82 165 IPR005175 -
Cpe01g01079 265 ProSiteProfiles PPC domain profile profile. 78 214 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01079 Cpe13g01102 CCT
Cpe01g00169 Cpe01g01079 CCT
Cpe01g01079 Cpe01g02551 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01079 Cpe-Chr1:6366461 Cpe03g01502 Cpe-Chr3:11828854 1.26E-73 dispersed
Cpe07g00165 Cpe-Chr7:981737 Cpe01g01079 Cpe-Chr1:6366461 1.06E-43 dispersed
Cpe11g00483 Cpe-Chr11:2791560 Cpe01g01079 Cpe-Chr1:6366461 3.71E-40 dispersed
Cpe12g00151 Cpe-Chr12:965802 Cpe01g01079 Cpe-Chr1:6366461 3.11E-62 dispersed
Cpe17g00234 Cpe-Chr17:1518658 Cpe01g01079 Cpe-Chr1:6366461 2.70E-63 dispersed
Cpe18g00682 Cpe-Chr18:6828702 Cpe01g01079 Cpe-Chr1:6366461 8.24E-42 dispersed
Cpe01g00169 Cpe-Chr1:954469 Cpe01g01079 Cpe-Chr1:6366461 3.12E-169 wgd
Cpe01g01079 Cpe-Chr1:6366461 Cpe01g02551 Cpe-Chr1:20834550 1.40E-66 wgd
Cpe01g01079 Cpe-Chr1:6366461 Cpe13g01102 Cpe-Chr13:8883391 6.64E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01079 - - csv:101217530 385.956