Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01088 ATGGGAGGTGCTTGCGGTTATGGAAACTTGTTCGACGATGGCTACGGTGTGAACACGGCGGCGCTGAGCACTGCTCTGTTCAACAACGGTTTGAGCTGCGGAGCTTGTTTCGAGATTAAGTGCGTTGACGATCCACAGTGGTGCCATCCCGGGAATCCGTCAATTATCATAACGGCCACGAACTTTTGCCCTCCGAACTTCGCGATTCCGAGCGACAATGGAGGGTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCTCCATGCCTATGTTCCTCAAGCTCGCCCAGTACAAAGCCGGAATTATTCCCGTCACTTATCGCAGAAGAGGAAGGCATGGACTCGGTCTATTTTAA 354 53.11 MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITATNFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRRRGRHGLGLF 117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6418949 6420450 + Cp4.1LG01g10840.1 Cpe01g01088 462401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01088 117 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 2 108 IPR007112 -
Cpe01g01088 117 PANTHER EXPANSIN-A6 1 109 - -
Cpe01g01088 117 Pfam Lytic transglycolase 19 106 IPR009009 -
Cpe01g01088 117 PANTHER EXPANSIN-A15 1 109 IPR002963 GO:0009664
Cpe01g01088 117 SUPERFAMILY Barwin-like endoglucanases 1 108 IPR036908 -
Cpe01g01088 117 PRINTS Expansin signature 14 28 IPR002963 GO:0009664
Cpe01g01088 117 PRINTS Expansin signature 91 104 IPR002963 GO:0009664
Cpe01g01088 117 PRINTS Expansin signature 55 65 IPR002963 GO:0009664
Cpe01g01088 117 PRINTS Expansin signature 41 52 IPR002963 GO:0009664
Cpe01g01088 117 PRINTS Expansin signature 74 91 IPR002963 GO:0009664
Cpe01g01088 117 Gene3D - 1 109 IPR036908 -
Cpe01g01088 117 SMART dpbb_1 19 106 IPR007112 -
Cpe01g01088 117 PRINTS Expansin/Lol pI family signature 1 19 IPR007118 GO:0005576
Cpe01g01088 117 PRINTS Expansin/Lol pI family signature 99 115 IPR007118 GO:0005576
Cpe01g01088 117 PRINTS Expansin/Lol pI family signature 23 41 IPR007118 GO:0005576
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01088 Cpe-Chr1:6418949 Cpe02g01228 Cpe-Chr2:11088874 2.98E-70 dispersed
Cpe01g00178 Cpe-Chr1:1002796 Cpe01g01088 Cpe-Chr1:6418949 4.56E-69 wgd
Cpe01g01088 Cpe-Chr1:6418949 Cpe01g02305 Cpe-Chr1:19451816 6.92E-69 wgd
Cpe01g01088 Cpe-Chr1:6418949 Cpe10g00890 Cpe-Chr10:5008797 1.86E-69 wgd
Cpe01g01088 Cpe-Chr1:6418949 Cpe16g00619 Cpe-Chr16:6736333 7.81E-66 wgd
Cpe01g01088 Cpe-Chr1:6418949 Cpe19g00348 Cpe-Chr19:3058720 5.80E-68 wgd
Cpe01g01088 Cpe-Chr1:6418949 Cpe20g00823 Cpe-Chr20:7443824 7.00E-72 wgd
Cpe01g01088 Cpe-Chr1:6418949 Cpe05g00925 Cpe-Chr5:6080077 1.59E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01088 - - gmx:100812894 223.787