Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01110 ATGATTATTGTCTGTGGATTTTGGACGGGCATGGTGGGCTCCGAGGACTCTGGTACTTCTGGGGCCGCAGTGCAGCTCTCTGGCAATCGGAAATTGTTCTGGCGCTCGGCTTCGTGGTCTGCATCACGTTCCTCCCTTCACCACCCGGAAGTGAACAGAGAAGGTGGAGACCCCAATGGGAATCTTGGTGATAGCAGTGGACCAAGCCGAATTTTCCCTGCCCCATTAACTCCAAGGTCGCAGCAGCATTGCAAAGCGAGGTCGTGTTTGCCTCCTTTACAACCTTTGTCCATAGCTCGGCGAAGCTTAGATGAATGGCCGAAGGCGGGATCGGATGATATTGGTGAGTGGCCGCAGCCTCCTACACCAAGTGGCAGAGGAAATTGCGAGAGGTTGAAACTTGATTTGTCGACAATTCAGAGAAACCCGGATAAGAATTGTGGGCTGGTGAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGTTCAAAGGTGGCTGAACATGTATATCTTGGTGGTGATGCGGTTGCTCGAGATAGGGATATACTTAAACAGAATGGAATTACTCATGTGTTGAATTGTGTAGGTTTCGTTTGCCCTGAGTACTTCAAAGATGATTTCGTGTACAGAACTTTGTGGTTGCAGGATAGCCCTTCTGAGGATATTACCAGTATACTTTATGATGTTTTTGACTACTTTGAAGATGTTAGAGAACAAAATGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCGCGGTCGACGTCGTTGGTGATTGCCTATCTTATGTGGAGAGAAGGGCAGAGTTTTGATGATGCATTTCAATATGTAAAGGCAGCAAGAGGTATTGCTGACCCCAATATGGGTTTTGCTTGCCAGTTATTACAATGCCAAAAGAGGGTCCATGCTTTCCCTCTTAGCCCAAGTTCACTGTTGAGGATGTACAGAGTTGCTCCACACTCGCCATATGATCCTTTGCATTTGGTCCCCAAAATGTTAAATGATCCTTCTACCTCATCTCTGGATTCTAGAGGTGCATTTATCATTCATGTACCCTCTGCCATATTTGTTTGGATTGGTAAGAACTGTGAAGCAATCATGGAAAGAGATGCGAGGGGAGCTGTTGTGCAAATCGTTCGATATGAGAAGGTGCATGGGCCTATTTATGTAATTAAAGAAGGGGAAGAACCAGCCAACTTTTGGGACTCTTTTGCAAACCTGTTACCTTTAATGGATAAATCTAACAGTAAAATTAATCTTGGGGAATTAAGAGCTAAGCCTTATCCAGGGGAGAGGAGAGTTGATTCCTATGATTTAGATTTTGAAATTTTCCAGAAGGCTATTACTGGTGGTTTCGTTCCTCCATTTCCTTCATCTGAGAATGAGCATGAAACCCATCTTCCTGTCAGAGAAAGCAGTTGGAGTATGCTTAGGCGTAAGTTTGCCTCTGGAAATATGAGAGAGTTTGTATCAGCTCCACGGATATCGCTCTCTAGGGTCTATTCTGACTCGTTGATGATGGTGCATTTTTCTGCAAAACCTTCATCGCCTTCAGCAATTTCTTTGTCTTCGTCATCTTCTTCGCCTATCCATCTTTCGCCAGACTCCCTTTCTTCTGATTCAAGTTCAAGTTCAAGTTCAAGTTCAAGTACCAATTCCTTAGAATCGATGCCCGATGGTCCAGAAACTCGTGATGCAGTCCCTTTGGAATCAAGTTCTCGGTCATTCTCATTCCCATCCAAAAAGTTCTCACCTTCTCTTGCAGAACGCCGAGGTAGTGCAAAATCTCTGACATTGCCTACAATGCCTTGTAAAATCAGAGCAACAAATAGTGCCTCAAGGTTTCTTGCCACTCAAGAAGATGGTAAGAGGAAAAACAAGATTTCTTTCTCTCTTGATGCATCATTTAATATGAAAAAGGGCTCAGAGCCTATGGATAATGTTGAAGATGAACAAACAAGTTCCACTCAGAATTTCAAGAATATCGAAAATGGAATGGATGTACGGGTAGGTTGCATGGCCACGAGCCAGGTCGAAACTGAAGTTGCTGGACAATCAGCTGGTTCATGGAAAAGCTATCCAAAACATTTTGAAGAAGGCATGGTATCCAGTGTGTCAAATGGGAAGCAAGATGGTGAGTTTGTCCAACCAATGGTATACTGTTGGCCGGAGTTAGCAAAGATTGCAGCTTTTGACACAAGTTACCTTCATTCTAAAGCTGCCGTAGTGATTTTCTCTCCAAGTAGGTATTTAGGCAAGAAGGATGACATGATGCTGTATATTTGGGTAGGAAATTCTTTTGACCATGATTTATCTCCGATTCAAGTAAAGAGGGACAAAGACTTGGTTGATGTAGAAAAGATAGACTGGGTTAAAGTTGGCCAATATGTGCTTACTGAAATAGGTCTGCCAGAAAATACAGAAATTAAGATCGTTAAAGAAGGTGAAGAAACAGAGGAATTTCTTGCACGATTGAGTCTTTTGTAG 2487 43.31 MIIVCGFWTGMVGSEDSGTSGAAVQLSGNRKLFWRSASWSASRSSLHHPEVNREGGDPNGNLGDSSGPSRIFPAPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNCERLKLDLSTIQRNPDKNCGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKQNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRVAPHSPYDPLHLVPKMLNDPSTSSLDSRGAFIIHVPSAIFVWIGKNCEAIMERDARGAVVQIVRYEKVHGPIYVIKEGEEPANFWDSFANLLPLMDKSNSKINLGELRAKPYPGERRVDSYDLDFEIFQKAITGGFVPPFPSSENEHETHLPVRESSWSMLRRKFASGNMREFVSAPRISLSRVYSDSLMMVHFSAKPSSPSAISLSSSSSSPIHLSPDSLSSDSSSSSSSSSSTNSLESMPDGPETRDAVPLESSSRSFSFPSKKFSPSLAERRGSAKSLTLPTMPCKIRATNSASRFLATQEDGKRKNKISFSLDASFNMKKGSEPMDNVEDEQTSSTQNFKNIENGMDVRVGCMATSQVETEVAGQSAGSWKSYPKHFEEGMVSSVSNGKQDGEFVQPMVYCWPELAKIAAFDTSYLHSKAAVVIFSPSRYLGKKDDMMLYIWVGNSFDHDLSPIQVKRDKDLVDVEKIDWVKVGQYVLTEIGLPENTEIKIVKEGEETEEFLARLSLL 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6560631 6565492 - Cp4.1LG01g10590.1 Cpe01g01110 462423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01110 828 MobiDBLite consensus disorder prediction 531 599 - -
Cpe01g01110 828 MobiDBLite consensus disorder prediction 109 128 - -
Cpe01g01110 828 SUPERFAMILY Actin depolymerizing proteins 308 409 - -
Cpe01g01110 828 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 11 822 - -
Cpe01g01110 828 MobiDBLite consensus disorder prediction 568 582 - -
Cpe01g01110 828 Pfam Gelsolin repeat 336 401 IPR007123 -
Cpe01g01110 828 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 220 281 IPR000387 GO:0016311|GO:0016791
Cpe01g01110 828 Gene3D Severin 312 407 IPR029006 -
Cpe01g01110 828 MobiDBLite consensus disorder prediction 531 558 - -
Cpe01g01110 828 SMART dsp_5 161 300 IPR020422 GO:0006470|GO:0008138
Cpe01g01110 828 ProSitePatterns Tyrosine specific protein phosphatases active site. 245 255 IPR016130 GO:0016311|GO:0016791
Cpe01g01110 828 Pfam Dual specificity phosphatase, catalytic domain 169 299 IPR000340 GO:0008138|GO:0016311
Cpe01g01110 828 ProSiteProfiles Dual specificity protein phosphatase domain profile. 161 303 IPR020422 GO:0006470|GO:0008138
Cpe01g01110 828 MobiDBLite consensus disorder prediction 44 76 - -
Cpe01g01110 828 SMART VILL_6 310 407 IPR007122 GO:0051015
Cpe01g01110 828 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 156 302 IPR029021 -
Cpe01g01110 828 PANTHER MKPA PROTEIN 11 822 - -
Cpe01g01110 828 Gene3D Protein tyrosine phosphatase superfamily 148 303 IPR029021 -
Cpe01g01110 828 CDD DSP 162 296 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00201 Cpe01g01110 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01110 Cpe-Chr1:6560631 Cpe01g01575 Cpe-Chr1:9430635 2.55E-12 dispersed
Cpe15g00859 Cpe-Chr15:8375603 Cpe01g01110 Cpe-Chr1:6560631 7.56E-13 transposed
Cpe17g00126 Cpe-Chr17:803684 Cpe01g01110 Cpe-Chr1:6560631 1.70E-22 transposed
Cpe18g00937 Cpe-Chr18:8248876 Cpe01g01110 Cpe-Chr1:6560631 2.65E-20 transposed
Cpe01g00201 Cpe-Chr1:1131124 Cpe01g01110 Cpe-Chr1:6560631 5.91E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01110 - - csv:101223210 1415.98