Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01135 ATGATGATGTTGAATCTTAACGATTCGATTATGAATCGTGACGAAGCGACGACGGATCGGATCGTAATGGAGGATTCGGAGACTTCGAATTCCTCTGTCGTTAATGCCGATGAGGTCTGCAACAGCAGAGATGAAGAGTCCTCTGTTTTAATCTTCGATATTCTCAAGAAGGAAAGTCCCGGCGGCGTCGGCGGCGGTCCAGTGCCTGAATTAGTCACCCAGCCGCTTTTCCCGGTTGCCGGTGGGTGGGGAGATTCTGGGTCTCCGATACTCAGGACCCAGTGGTTGAACCTGTCGCCGACGGCGGATTCTGGTGGCGGTGGAGGACAGCCGGAGCTGAAAACTGCGCAGCCGAAACAACAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGGTCCAGAAGCTCGCAGTACCGTGGGGTTACGTTTTACCGGCGTACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGCGGGTTCGACACAGCCCATGCTGCAGCAAGGGCTTATGATCGAGCGGCTATAAAATTTAGAGGAGTCGATGCAGATATAAACTTCAATATAAGTGATTACGACGAAGATATGAAACAAACAAAGAATCTAAACAAAGAAGAGTTTGTGCATGTTCTACGTCGACAAAGTTCTGGAATTTCTCGTGGAGGATCAAAGCTAAGAGGACTATCTGTTCAAAGATATGGACGATGGGAAACTCAAATGAATCAAATTATTGGAAATAAGGGAACTGAGGAAAGGTCCGAGACAACCGTGGATGCAAGTAATGGAGGCAATGGACATAATCTTGATTTGAGCATTGGAGGAATTTTCAACTACCATTTTAGTAATTCTTCTCAAAAGCTCAACATTGAGAGACCAAAGGAAAGAGGGAGAGAGACGAGAAACAAGGAGTCGACGGGTTGGAGATGGCAAACGGCGAGGTCGATAGAAGGAAACGTGAACGAAGAAAAGACTAAGAAGATAGAAAGCCATGGTTCCAAGAGTGCAGCATCATCAGGATTCTCTCCCTCTTTTAATTTTGGTTCATTTTATGCCCAAAACAACACACCTCTCCACACTAATCACTGCCTTCCAACGCCTTACACCAATATTTCTTGA 1128 46.9 MMMLNLNDSIMNRDEATTDRIVMEDSETSNSSVVNADEVCNSRDEESSVLIFDILKKESPGGVGGGPVPELVTQPLFPVAGGWGDSGSPILRTQWLNLSPTADSGGGGGQPELKTAQPKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNISDYDEDMKQTKNLNKEEFVHVLRRQSSGISRGGSKLRGLSVQRYGRWETQMNQIIGNKGTEERSETTVDASNGGNGHNLDLSIGGIFNYHFSNSSQKLNIERPKERGRETRNKESTGWRWQTARSIEGNVNEEKTKKIESHGSKSAASSGFSPSFNFGSFYAQNNTPLHTNHCLPTPYTNIS 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6736665 6739575 + Cp4.1LG01g10310.1 Cpe01g01135 462448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01135 375 CDD AP2 136 194 IPR001471 GO:0003700|GO:0006355
Cpe01g01135 375 MobiDBLite consensus disorder prediction 290 342 - -
Cpe01g01135 375 SMART rav1_2 136 198 IPR001471 GO:0003700|GO:0006355
Cpe01g01135 375 MobiDBLite consensus disorder prediction 98 137 - -
Cpe01g01135 375 Pfam AP2 domain 136 184 IPR001471 GO:0003700|GO:0006355
Cpe01g01135 375 SUPERFAMILY DNA-binding domain 135 194 IPR016177 GO:0003677
Cpe01g01135 375 Gene3D AP2/ERF domain 135 194 IPR036955 GO:0003700|GO:0006355
Cpe01g01135 375 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 3 356 - -
Cpe01g01135 375 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 356 - -
Cpe01g01135 375 MobiDBLite consensus disorder prediction 292 308 - -
Cpe01g01135 375 ProSiteProfiles AP2/ERF domain profile. 136 192 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01135 Cpe-Chr1:6736665 Cpe05g01156 Cpe-Chr5:7851229 6.23E-10 dispersed
Cpe01g00229 Cpe-Chr1:1301560 Cpe01g01135 Cpe-Chr1:6736665 4.59E-145 wgd
Cpe01g01135 Cpe-Chr1:6736665 Cpe16g00565 Cpe-Chr16:6443669 9.67E-10 wgd
Cpe01g01135 Cpe-Chr1:6736665 Cpe19g00398 Cpe-Chr19:3551661 1.25E-09 wgd
Cpe01g01135 Cpe-Chr1:6736665 Cpe03g00153 Cpe-Chr3:770883 6.27E-10 wgd
Cpe01g01135 Cpe-Chr1:6736665 Cpe05g00875 Cpe-Chr5:5758181 4.31E-10 wgd
Cpe01g01135 Cpe-Chr1:6736665 Cpe08g01126 Cpe-Chr8:8455417 1.36E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48821 PF00847 AP2 4.90E-10 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01135 K09284 - csv:101204131 487.263