Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01139 ATGGCTTACTTGGCCAAATGTACAAATGCTCCCTCAACGCCGATCACTGTTCCAAACCACCCCTTATCTTACTCCCCAATCTCTTCTTCCTCCGCCGCCACCACCAATTTTGGTTCCCCACCCACTTCTCAGCCGTCGTCTCCCCCGCCGCCTACGGTGATCCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGCCGCCGCTGCGTCGAGAAGTGCGTTTTGGCTCCATATTTCCCTCCGTCCGAGCCTCTCAAGTTCACCATTGCTCATAGAGTCTTCGGGGCTAGCAATATCATCAAATTCTTGCAAGAGCTGCCAGAGTGTCAGAGGACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCGCGGCTGCGAGATCCAGTGTACGGCAGCGCCGGCGCTATTTGCCAGCTGCAAAAGCAAGTGAGCGAGCTGCAAGCCCAGCTAGCCAAGGCGAGGGCGGAGGTGGCTAATATGCAGCACCAACAAGCCAACTTATTGGCTTTGATTTGCATGGAAATGAGGCAATCGCCGGACCCCGTTTGGCCGCCGCAACTCGTCGACACTACCTGCTTCCTCGACGACGCCGCCCTTAGCTCGCCGTGGGAGCCACTTTGGACGTGA 627 57.1 MAYLAKCTNAPSTPITVPNHPLSYSPISSSSAATTNFGSPPTSQPSSPPPPTVILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLALICMEMRQSPDPVWPPQLVDTTCFLDDAALSSPWEPLWT 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6773070 6774058 + Cp4.1LG01g10320.1 Cpe01g01139 462452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01139 208 Pfam Lateral organ boundaries (LOB) domain 57 154 IPR004883 -
Cpe01g01139 208 Coils Coil 136 170 - -
Cpe01g01139 208 ProSiteProfiles LOB domain profile. 56 157 IPR004883 -
Cpe01g01139 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 40 190 - -
Cpe01g01139 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 40 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01139 Cpe-Chr1:6773070 Cpe02g01297 Cpe-Chr2:11546733 2.58E-26 dispersed
Cpe01g00236 Cpe-Chr1:1342584 Cpe01g01139 Cpe-Chr1:6773070 3.27E-105 wgd
Cpe01g01139 Cpe-Chr1:6773070 Cpe13g00820 Cpe-Chr13:7303134 1.78E-66 wgd
Cpe01g01139 Cpe-Chr1:6773070 Cpe16g00556 Cpe-Chr16:6368390 4.61E-75 wgd
Cpe01g01139 Cpe-Chr1:6773070 Cpe20g00754 Cpe-Chr20:6701146 1.81E-73 wgd
Cpe01g01139 Cpe-Chr1:6773070 Cpe05g00866 Cpe-Chr5:5685489 1.39E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48822 PF03195 LOB 6.00E-40 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01139 - - bhj:120081845 359.377