Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01152 ATGTCGAATTCCGATTCTGGCAACACCAATGGAGTCTCCAATGGCGCCGCCATTGATACCCCCAAAAACCAGCCCTCTTCAAATGGGGCCCTCGTCGTTAAAAAGCCTCCCTCCAAGGACCGCCATAGCAAGGTCGATGGTCGTGGTCGCCGCATCCGTATGCCCATCATATGCGCCGCTCGAGTATTCCAGTTGACTCGAGAGCTTGGTCATAAGTCCGATGGCCAGACCATCGAGTGGCTCCTTCGCCAGGCTGAGCCCTCTATTATTGCCGCCACTGGTACCGGCACTACCCCGGCTAATTTCTCCTCCGTCTCTCTTTCCGTCAGAGGAAATGGCGGCTCCACTTCTCTCTCTTCCCCTTCTTCCACCACTTCAACTCTCTCCCTCTCTCGCCCCCAGGCTCTCTCGGGCCCCACGCCGTTTATTCTCGGCAAGCGCGTTAGGTCCGATGACGACGGCGGTAAGGACGATGGGTCGGGAGTGGGTCCGACTGGGCCAGGTGGGTACTGGGCGGTTCCAGCGAGACCCGATTATGGGCAGGTGTGGAGTTTTGCCGCCGCGGCTCCCTCAGAAATGGTGGTTCAACCCGGGGGGATTTCTCAACAAGCGTCGTTGTTTGCCCAACCGCAGCAGCCGATTAGAGAAGCGTCGGCGGCGAGAGTGGGGAATTACCTTCCCAGTCATCTGAATTTACTGGCGTCTTTGTCCGGTGGCGGTGGTTCTGGCCGGCGGGAAGATGACCCTCGCTGA 753 58.83 MSNSDSGNTNGVSNGAAIDTPKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSTSLSSPSSTTSTLSLSRPQALSGPTPFILGKRVRSDDDGGKDDGSGVGPTGPGGYWAVPARPDYGQVWSFAAAAPSEMVVQPGGISQQASLFAQPQQPIREASAARVGNYLPSHLNLLASLSGGGGSGRREDDPR 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6847350 6848102 + Cp4.1LG01g10190.1 Cpe01g01152 462465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01152 250 MobiDBLite consensus disorder prediction 110 169 - -
Cpe01g01152 250 ProSiteProfiles TCP domain profile. 38 92 IPR017887 -
Cpe01g01152 250 MobiDBLite consensus disorder prediction 1 31 - -
Cpe01g01152 250 MobiDBLite consensus disorder prediction 110 136 - -
Cpe01g01152 250 MobiDBLite consensus disorder prediction 35 50 - -
Cpe01g01152 250 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 247 IPR005333 GO:0003700
Cpe01g01152 250 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 247 - -
Cpe01g01152 250 MobiDBLite consensus disorder prediction 1 50 - -
Cpe01g01152 250 Pfam TCP family transcription factor 38 124 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01152 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - csv:101206050 380.948
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01152 Cpe-Chr1:6847350 Cpe13g00517 Cpe-Chr13:5277063 2.82E-54 dispersed
Cpe04g01504 Cpe-Chr4:11883435 Cpe01g01152 Cpe-Chr1:6847350 2.76E-28 dispersed
Cpe05g00807 Cpe-Chr5:4999887 Cpe01g01152 Cpe-Chr1:6847350 7.12E-28 dispersed
Cpe01g01152 Cpe-Chr1:6847350 Cpe01g01952 Cpe-Chr1:16621055 3.74E-39 wgd
Cpe01g01152 Cpe-Chr1:6847350 Cpe19g00421 Cpe-Chr19:3820926 2.49E-33 wgd
Cpe01g01152 Cpe-Chr1:6847350 Cpe09g00495 Cpe-Chr9:3289850 3.63E-105 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01152 . 36 250 TCP Transcription Factor Family AT5G23280 62.7 3.3e-64 242.3
Cpe09g00495 . 33 230 TCP Transcription Factor Family AT5G23280 58.0 2.1e-58 223.0
Cpe20g00029 CCT,ECH 35 134 TCP Transcription Factor Family AT3G47620 83.0 2.5e-39 160.6
Cpe04g00477 . 33 276 TCP Transcription Factor Family AT3G27010 55.5 5.1e-54 208.8
Cpe01g01152 . 8 248 TCP Transcription Factor Family AT5G08330 55.2 9.6e-61 230.7
Cpe09g00495 . 10 228 TCP Transcription Factor Family AT5G08330 57.0 8.1e-60 227.6
Cpe13g00517 . 1 103 TCP Transcription Factor Family AT5G08330 82.7 3.0e-38 156.0
Cpe04g01456 CCT,CST 31 177 TCP Transcription Factor Family AT5G60970 56.1 2.0e-38 157.1
Cpe03g00977 . 53 164 TCP Transcription Factor Family AT3G02150 66.4 2.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48823 PF03634 TCP 3.50E-33 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01152 Cpe_Chr01 FPKM 50.490147 53.657436 38.084351 38.533234 53.69656 48.294373 55.254498 33.84174 34.306656 35.553043