Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01183 ATGTATGTCATCAAATTGGGTTTTAATCCATTTGAATGTCTCGAATCTGACGCCATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCACGAATTAAAAAGATAATGCAAGCAGATGAGGACGTGGGAAAGATAGCACTTGCAGTGCCCGTTTTAGTTTCTAAAGCATTGGAACTGTTCCTGCAAGACCTGTGTGATCGTACATATGAGATAACTCTACAAAGAGGAGCGAAGACAATGAACTCGTTGCACCTAAAGCACTGTGTACAAAGCTATAGTGTTTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCCCTTGCTGATGAAAGTAATGACATTGATGAGATGAAGAAGAGCAAGACGCATGACATGAGCCATGGTAGCACTGGTAGAGGAAGAGGAAGGGGACGAGGACGGGGTCGTGGACGACCTGCTCGATCAGTCGAAAAGGACAACTTCCAACCTAACCCCGACGTCGACCCTTGCACATCTATAGAGAACACGAACAAGAATCCCAACCAAGATGTGCACATGGAGCCTCACATTGAGCCTAGTGAAACACCAAAAGAAGTTGGCGAAGACAATCAAACTATCCAAAACATCGATCTTAATGCCGATGTCAATGCCAGCAAAGACTCGAAGACTGTACCAGCAGCAATGTCAGATGTACCTGTAGAACCAGCCGAGCCTACTACTACCGAGTCCGAGGCTAAAGCAGCTGACGAATTCCCTGCCTGGCCTCTCTCTGATGTGGACAAAATGGCAATTGACCCTCTCCAATATGCACATCTCAGCACAAGAGTAGACGAGGAAGAGGAAGATTATGATGAAGAGGAGTAA 900 45.89 MYVIKLGFNPFECLESDAMRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLADESNDIDEMKKSKTHDMSHGSTGRGRGRGRGRGRGRPARSVEKDNFQPNPDVDPCTSIENTNKNPNQDVHMEPHIEPSETPKEVGEDNQTIQNIDLNADVNASKDSKTVPAAMSDVPVEPAEPTTTESEAKAADEFPAWPLSDVDKMAIDPLQYAHLSTRVDEEEEDYDEEE 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7036369 7041551 + Cp4.1LG01g09860.1 Cpe01g01183 462496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01183 299 Coils Coil 281 299 - -
Cpe01g01183 299 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 89 IPR003958 -
Cpe01g01183 299 MobiDBLite consensus disorder prediction 196 210 - -
Cpe01g01183 299 MobiDBLite consensus disorder prediction 108 150 - -
Cpe01g01183 299 MobiDBLite consensus disorder prediction 177 195 - -
Cpe01g01183 299 MobiDBLite consensus disorder prediction 225 264 - -
Cpe01g01183 299 MobiDBLite consensus disorder prediction 108 213 - -
Cpe01g01183 299 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 19 298 - -
Cpe01g01183 299 SUPERFAMILY Histone-fold 22 107 IPR009072 GO:0046982
Cpe01g01183 299 PANTHER HISTONE SUPERFAMILY PROTEIN 19 298 - -
Cpe01g01183 299 Gene3D Histone, subunit A 13 104 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01183 K21752 DRAP1, NC2-alpha; Dr1-associated corepressor - csv:101209714 456.447
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01183 Cpe09g00475 CCT
Cpe01g01183 Cpe09g00475 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01183 Cpe-Chr1:7036369 Cpe15g00258 Cpe-Chr15:2468536 5.20E-12 dispersed
Cpe07g00062 Cpe-Chr7:302060 Cpe01g01183 Cpe-Chr1:7036369 1.13E-06 transposed
Cpe11g00366 Cpe-Chr11:2009655 Cpe01g01183 Cpe-Chr1:7036369 1.53E-11 transposed
Cpe16g00834 Cpe-Chr16:8017190 Cpe01g01183 Cpe-Chr1:7036369 4.48E-71 transposed
Cpe01g01183 Cpe-Chr1:7036369 Cpe09g00475 Cpe-Chr9:3124197 2.07E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g930 . . . . . . . . . Cmo04g01369 . . . . . . Cpe09g00475 . . . . . . . . . . . . . . . . . . . . Chy10g00706 Cme10g00737 . . . . . . . . . . . . . . . Cpe01g01183 . . . . . . . . . . . . . . . Lsi04g00745 Csa05g02134 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe18g00908 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.0 5.3e-88 321.2
Cpe04g01618 . 102 286 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.5 3.4e-87 318.5
Cpe04g00147 . 100 268 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 7.2e-53 204.5
Cpe18g00070 . 111 278 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.7 7.2e-53 204.5
Cpe15g00258 . 70 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 66.4 1.6e-52 203.4
Cpe04g00402 . 140 283 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.1 8.0e-52 201.1
Cpe04g00147 . 19 278 CCAAT-HAP5 Transcription Factor Family AT1G08970 54.8 1.4e-53 206.8
Cpe18g00070 . 38 278 CCAAT-HAP5 Transcription Factor Family AT1G08970 54.1 1.2e-52 203.8
Cpe04g00402 . 86 238 CCAAT-HAP5 Transcription Factor Family AT1G08970 72.1 2.1e-49 193.0
Cpe15g00258 . 30 167 CCAAT-HAP5 Transcription Factor Family AT1G08970 73.8 2.8e-49 192.6
Cpe18g00908 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 8.7e-43 171.0
Cpe04g01618 . 102 200 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.5e-42 169.5
Cpe04g00147 . 79 268 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.4 1.9e-60 229.6
Cpe18g00070 . 60 278 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.9 9.0e-58 220.7
Cpe15g00258 . 30 211 CCAAT-HAP5 Transcription Factor Family AT1G54830 62.3 9.6e-52 200.7
Cpe18g00908 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.1e-51 199.5
Cpe04g00402 . 86 282 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 2.8e-51 199.1
Cpe04g01618 . 102 260 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 1.1e-50 197.2
Cpe18g00908 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.9 5.6e-38 154.8
Cpe04g01618 . 102 262 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.0 9.6e-38 154.1
Cpe18g00908 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 2.5e-80 295.8
Cpe04g01618 . 102 286 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 9.6e-80 293.9
Cpe04g00147 . 100 268 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 8.0e-50 194.5
Cpe15g00258 . 70 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.3 2.3e-49 193.0
Cpe04g00402 . 140 292 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.8 3.9e-49 192.2
Cpe18g00070 . 111 278 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 1.5e-48 190.3
Cpe04g00402 . 104 271 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 1.2e-64 243.4
Cpe15g00258 . 33 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 76.9 5.5e-62 234.6
Cpe04g00147 . 100 236 CCAAT-HAP5 Transcription Factor Family AT1G56170 72.7 9.8e-51 197.2
Cpe18g00070 . 85 242 CCAAT-HAP5 Transcription Factor Family AT1G56170 70.6 3.7e-50 195.3
Cpe04g01618 . 102 225 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.9e-50 194.9
Cpe18g00908 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.9e-50 194.9
Cpe01g01183 CCT,ECH 19 298 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.5 8.4e-59 224.6
Cpe16g00834 . 1 280 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.3 6.2e-54 208.4
Cpe11g00366 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.2 6.2e-38 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008681 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48828 PF00808 CBFD_NFYB_HMF 2.30E-19 CL0012 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01183 Cpe_Chr01 FPKM 0.695007 0.779489 1.649325 1.452498 1.782719 0.0 0.943424 0.889717 1.150009 0.913472