Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01183 ATGTATGTCATCAAATTGGGTTTTAATCCATTTGAATGTCTCGAATCTGACGCCATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCACGAATTAAAAAGATAATGCAAGCAGATGAGGACGTGGGAAAGATAGCACTTGCAGTGCCCGTTTTAGTTTCTAAAGCATTGGAACTGTTCCTGCAAGACCTGTGTGATCGTACATATGAGATAACTCTACAAAGAGGAGCGAAGACAATGAACTCGTTGCACCTAAAGCACTGTGTACAAAGCTATAGTGTTTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCCCTTGCTGATGAAAGTAATGACATTGATGAGATGAAGAAGAGCAAGACGCATGACATGAGCCATGGTAGCACTGGTAGAGGAAGAGGAAGGGGACGAGGACGGGGTCGTGGACGACCTGCTCGATCAGTCGAAAAGGACAACTTCCAACCTAACCCCGACGTCGACCCTTGCACATCTATAGAGAACACGAACAAGAATCCCAACCAAGATGTGCACATGGAGCCTCACATTGAGCCTAGTGAAACACCAAAAGAAGTTGGCGAAGACAATCAAACTATCCAAAACATCGATCTTAATGCCGATGTCAATGCCAGCAAAGACTCGAAGACTGTACCAGCAGCAATGTCAGATGTACCTGTAGAACCAGCCGAGCCTACTACTACCGAGTCCGAGGCTAAAGCAGCTGACGAATTCCCTGCCTGGCCTCTCTCTGATGTGGACAAAATGGCAATTGACCCTCTCCAATATGCACATCTCAGCACAAGAGTAGACGAGGAAGAGGAAGATTATGATGAAGAGGAGTAA 900 45.89 MYVIKLGFNPFECLESDAMRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLADESNDIDEMKKSKTHDMSHGSTGRGRGRGRGRGRGRPARSVEKDNFQPNPDVDPCTSIENTNKNPNQDVHMEPHIEPSETPKEVGEDNQTIQNIDLNADVNASKDSKTVPAAMSDVPVEPAEPTTTESEAKAADEFPAWPLSDVDKMAIDPLQYAHLSTRVDEEEEDYDEEE 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7036369 7041551 + Cp4.1LG01g09860.1 Cpe01g01183 462496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01183 299 Coils Coil 281 299 - -
Cpe01g01183 299 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 89 IPR003958 -
Cpe01g01183 299 MobiDBLite consensus disorder prediction 196 210 - -
Cpe01g01183 299 MobiDBLite consensus disorder prediction 108 150 - -
Cpe01g01183 299 MobiDBLite consensus disorder prediction 177 195 - -
Cpe01g01183 299 MobiDBLite consensus disorder prediction 225 264 - -
Cpe01g01183 299 MobiDBLite consensus disorder prediction 108 213 - -
Cpe01g01183 299 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 19 298 - -
Cpe01g01183 299 SUPERFAMILY Histone-fold 22 107 IPR009072 GO:0046982
Cpe01g01183 299 PANTHER HISTONE SUPERFAMILY PROTEIN 19 298 - -
Cpe01g01183 299 Gene3D Histone, subunit A 13 104 IPR009072 GO:0046982
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01183 Cpe09g00475 CCT
Cpe01g01183 Cpe09g00475 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01183 Cpe-Chr1:7036369 Cpe15g00258 Cpe-Chr15:2468536 5.20E-12 dispersed
Cpe07g00062 Cpe-Chr7:302060 Cpe01g01183 Cpe-Chr1:7036369 1.13E-06 transposed
Cpe11g00366 Cpe-Chr11:2009655 Cpe01g01183 Cpe-Chr1:7036369 1.53E-11 transposed
Cpe16g00834 Cpe-Chr16:8017190 Cpe01g01183 Cpe-Chr1:7036369 4.48E-71 transposed
Cpe01g01183 Cpe-Chr1:7036369 Cpe09g00475 Cpe-Chr9:3124197 2.07E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48828 PF00808 CBFD_NFYB_HMF 2.30E-19 CL0012 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01183 K21752 - csv:101209714 456.447