Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01194 ATGTATTCTCCACGAAGAAATCAGGCCATTGGTAGGGTTTCTTTACTGGATCTGCAGGTTGGTGGGAGTTCAATTAGAGATCCGAGCGATTTCTTGAAGACTGTGACAAGAAATTTCACTCCGGCTGTATTCATGGAAAACGTGGAGGAAACGAAGCCATCAGGTACAAACATTTGCCTTCCTGATGGCGCAACAGACACCGCTGAAGTTCAATTTTCAGAATTTTGTGAGAACGGATTACGTCTGGACGAGAATTGTTGTAATCAAGCGTTGAAGTTATATAGAGAGACCAAGCACCTTTTGGTGGCAAATATATCAGCAATTGGGAGTGGAATTCCCGAAGAAGCCAACCGATTTTGGTCCGCCTTTGTTTTGTATTCCGTGAAGAGGCTGAGAGATAAGAATTCAGAAAGTTCACATCAGGGATCTGAGAACAACAGCTTCACGTTATGCCACATATTGAGAGTTTGCAAGCTGAACATTGTAGAATTTTTTAAAGAGCTTCCTCAGTTTGTTGTTAAAGCTGGTCCAGTATTAAGTAATCTTTATGGTGCAGATTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAGGCTAACTTCGTTCATTTGAGCCTCTTAAGCAAGTATTATAAGCGTGTCTACCGAGAATTCTTCTCCACCAGTGATGCTAATGTTGAAAAGCAGTCAGCTTTATCCTGTCCTACGGGTTACTTGTCTGATTACCATCGTTTTGGATGGTTGTTATTTTTGGCTCTTCGTGTACATTCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGTTCGTTTCAGAAACTTCAACATTCTTGACTCGGAACGCTTTGTTAAGAAAGGTGGAAAAGGAGTGGATCTGCTTGGATCACTTTGTAATGTCTATGACACCTCAGAGGATGAACTGAGGGAAATAATGGATAAAGCAAATAGTTTGATAGAAGATATTTTGAAGAAGAAGCCGCGTTCGGCGTCTGAGTGTAATAGTAAAAGCTTGGAGAATATTGACACTGAGGGCTTGATATGCTTTGAAGGATTAATGGAGGAGTCATCTCTTTCATCCAGTTTAGAAATTCTGGAAAAGGACTATGAAGATGCAATTCATAATAAAGGTGAGCTCGATGAGCGGGTATTTGTTAATGATGAGGACAGTTTACTTGGTTCGGGTAGCTTGTCTGCAGGTGCTGTTGCAATGAGTGGCTTCAAGAGGAAGTTCGACTCAATGTGCTCACCTGCAAGGACAATAACCAGTCCAATGTCACCACTTCGCTCTCCTGGTTCACACGCCAATGGTACTCTTAATAGTGGCAACGCGAAACTTGCTGCCACGCCTGTTAGTACAGCCATGACAACGGCAAAGTGGCTCAGAACGGTTATTTCTCCACTTCCAGCAAAACCTTCAGCGGAGATGGAGCGCTTTTTAGCCTCTTGTGATAGGGATGTAACTAATGATGTCGTTCGCAGGGCACATATAATATTAGAGGCTATATTTCCAAATAGCGCTCTTGGAGAGCGTTGTATAGCTGGAAATTTACAAAGTGCGAACCTCATGGATAACATCTGGGCAGAACAGCGGCGACTAGAAGCATTGAAGTTATATTATAGAGTTTTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTGACTAATGAGAGGTTCCATAGATGTATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCGACTCATAAAACTGTTACAATGTTGTTTCCTGCTGTATTGGAGCGAACTGGAATAACCGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTTATTAGACATGAAGAGTCGCTTCCTAGAGAGCTGAGGCGACATCTTAATTCTTTGGAAGAACGGCTATTAGAGAGCATGGTATGGGAGAAAGGTTCATCAATGTATAACTCCCTGGTTGTTGCTAAACCTGCCCTTGCTGCAGAAATTAATCGCCTGGGTTTACTAGCCGAACCCATGCCATCTTTGGATGCAATTGCTGTTCAAATTAACTTTTCTGGTATTGGGGTATCAACCATGCCTAGTTTGCAGAAGCATGAGAGTTTGCCAGGTCAAAATGGGCATATAAGGTCACCCAAAAGATTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCTTTTACTTCTCCAGTGAAGGACCGACTCCTGGCTTTCAGTAATATCAAGTCTAAGCTTCTGCCACCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGGCCTAATCCCGGAGGTGGTGGTGAAACGTGCGCTGAAACTGGAATTAACATATTTTTTAGCAAGATCACCAAGTTGGCTGCTGTTAGAGTCAATGGTATGGTGGAAAGGTTGCAGTTATCTCACCAGATCAGGGAGAATGTCTACTGCCTTTTCCAACGGATACTCGGTCAAAAAACATCACTATTATTTAATCGTCACATCGACCAGATCATTCTTTGTTGTTTCTATGGTGTCGCGAAGATATCTCAATTGAGCCTCACGTTTAAGGAAATCATATACAACTACAGGAAGCAACCACAATGCAAACCTCAAATCTTCCGAAATGTGTTTGTTGATTGGTCTTCAGCACGTCGTAATGGGAGATCAGGACAGGATCACGTGGATATAATTACGTTCTACAATGAAATATTTATCCCTTCAATAAAACCTTTGCTCGTTGAGATTGGCCCAGCTGCATCAACCACGAAAACTGACAGAGTTCCTCAAGTCAACAACAACAACAACAATGCACCGTGCCCGGGATCACCTAAGATATCGCCTTTTCCAAGTCTTCCCGACATGTCTCCGAAGAAAGTATCTTCAGTACATAATGTCTACGTCTCTCCACTAAGATCATCAAAGATGGATGCGTTGATTTCACATAGTTCAAAAAGCTATTACGCTTGCGTTGGAGAGAGCACTCATGCGTTTCAAAGCCCTTCAAAAGACCTTACTGCCATAAACAACCGTTTGAAAAGTACACCACGGAAACTCCGAGGCACACTAAATTTTGACGACGCAGACGTTGGTTTGGTCAGTGATTCCCTGGTGGCGAACAGCCTTTACCCACAAAATGGAAGTTGTGGATCATCCTCAGGCCAGTCGCGGTTCCGACCATCACCAGCAATCCCAGTAATCTCTAGTGAAATATCAATGCTTCGATGTTCGGGCGCACGGACAATGCTAAGGCGTAAATGA 3231 43.02 MYSPRRNQAIGRVSLLDLQVGGSSIRDPSDFLKTVTRNFTPAVFMENVEETKPSGTNICLPDGATDTAEVQFSEFCENGLRLDENCCNQALKLYRETKHLLVANISAIGSGIPEEANRFWSAFVLYSVKRLRDKNSESSHQGSENNSFTLCHILRVCKLNIVEFFKELPQFVVKAGPVLSNLYGADWENRLEAKELQANFVHLSLLSKYYKRVYREFFSTSDANVEKQSALSCPTGYLSDYHRFGWLLFLALRVHSFSRFKDLVTCTNVRFRNFNILDSERFVKKGGKGVDLLGSLCNVYDTSEDELREIMDKANSLIEDILKKKPRSASECNSKSLENIDTEGLICFEGLMEESSLSSSLEILEKDYEDAIHNKGELDERVFVNDEDSLLGSGSLSAGAVAMSGFKRKFDSMCSPARTITSPMSPLRSPGSHANGTLNSGNAKLAATPVSTAMTTAKWLRTVISPLPAKPSAEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLVVAKPALAAEINRLGLLAEPMPSLDAIAVQINFSGIGVSTMPSLQKHESLPGQNGHIRSPKRLCTDLRSVLVERNSFTSPVKDRLLAFSNIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKITKLAAVRVNGMVERLQLSHQIRENVYCLFQRILGQKTSLLFNRHIDQIILCCFYGVAKISQLSLTFKEIIYNYRKQPQCKPQIFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSIKPLLVEIGPAASTTKTDRVPQVNNNNNNAPCPGSPKISPFPSLPDMSPKKVSSVHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLKSTPRKLRGTLNFDDADVGLVSDSLVANSLYPQNGSCGSSSGQSRFRPSPAIPVISSEISMLRCSGARTMLRRK 1076
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7112364 7120714 + Cp4.1LG01g09750.1 Cpe01g01194 462507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01194 1076 Gene3D - 736 928 - -
Cpe01g01194 1076 Gene3D - 451 639 - -
Cpe01g01194 1076 PANTHER BNACNNG22930D PROTEIN 49 1040 - -
Cpe01g01194 1076 Pfam Domain of unknown function (DUF3452) 141 269 IPR024599 -
Cpe01g01194 1076 SUPERFAMILY Cyclin-like 771 941 IPR036915 -
Cpe01g01194 1076 Pfam Retinoblastoma-associated protein A domain 448 649 IPR002720 GO:0005634|GO:0051726
Cpe01g01194 1076 MobiDBLite consensus disorder prediction 914 932 - -
Cpe01g01194 1076 SMART DUF3452_2 131 273 IPR024599 -
Cpe01g01194 1076 SUPERFAMILY Cyclin-like 456 651 IPR036915 -
Cpe01g01194 1076 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 49 1040 IPR028309 GO:0006357|GO:0051726
Cpe01g01194 1076 Coils Coil 361 381 - -
Cpe01g01194 1076 Pfam Retinoblastoma-associated protein B domain 773 900 IPR002719 GO:0005634|GO:0051726
Cpe01g01194 1076 SMART RB_A_2 448 649 IPR002720 GO:0005634|GO:0051726
Cpe01g01194 1076 MobiDBLite consensus disorder prediction 914 933 - -
Cpe01g01194 1076 Coils Coil 300 320 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01194 Cpe-Chr1:7112364 Cpe09g00459 Cpe-Chr9:2987986 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48829 PF01858 RB_A 4.30E-64 CL0065 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01194 K04681 - csv:101219810 1795.79