Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01198 ATGATGCCCTTGGTTTCCTTATCTTGCAGTATTAAGGACAACCTCAAAGTATATGCCATGACTGATGTCAGTCCAAGGACTGATATCTCTACCGACGTCGACACAGATGACAAAAACCAGAGGTGGAACACGGTGGCTTCTGATTCGAGTGATAGAACGAAAGATAAGTCCGATCAGAAGACTCTACGTAGGCTCGCGCAGAATCGTGAAGCTGCCCGAAAAAGCCGACTGCGAAAAAAAGCATATGTCCAACAGCTAGAGAGCAGTCGTTTGAAGTTGACACAACTAGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAGTGTTCATATCAAGCTCAGGAGATCAGGCCCATTCGATTACTGGAAATGGGGCCATGGCATTTGATGTGGAATATGCCCGTTGGTTGGAAGAACAAAACAAGCAGATCAATGAACTAAGAGCAGCAGTAAACTCTCATGCAAGTGATACTGAACTCCGAATGATTGTCGATGGCGTCTTGGCTCATTACGATGAGCTTCTTGTCAATCAATTAGAGCCCCTCACAGAACAGCAGTTCATGGGCATATCCAACTTGCAGCAGTCTTCACAACAGACTGAAGATGCATTATCACAAGGCATGGAAGCATTGCAACAGTCGTTGGCCGAGACGTTGTCTAGCGGATCTCTTGGCTCCTCGAACACATCTGGCAATGTGGCAAACTATATGGGTCAAATGGCCACAGCCATGGGCAAATTTGGGACTCTTGAGGGGTTTATTCGCCAGGCTGACAATCTACGGCAACAAACACTGCAACAAATGCATCGGATATTGACAACTCGTCAGTCGGCTCGTGCACTTCTTGGCATTCATGATTACTTCTCCAGACTACGAGCCCTTAGTTCACTGTGGCTTGCTCGCCCAAAAGAGTGA 912 47.59 MMPLVSLSCSIKDNLKVYAMTDVSPRTDISTDVDTDDKNQRWNTVASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGDQAHSITGNGAMAFDVEYARWLEEQNKQINELRAAVNSHASDTELRMIVDGVLAHYDELLVNQLEPLTEQQFMGISNLQQSSQQTEDALSQGMEALQQSLAETLSSGSLGSSNTSGNVANYMGQMATAMGKFGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLGIHDYFSRLRALSSLWLARPKE 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7130946 7134109 - Cp4.1LG01g09720.1 Cpe01g01198 462511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01198 303 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 58 102 IPR004827 GO:0003700|GO:0006355
Cpe01g01198 303 Gene3D - 59 108 - -
Cpe01g01198 303 PANTHER TRANSCRIPTION FACTOR TGA9 173 303 - -
Cpe01g01198 303 PANTHER TRANSCRIPTION FACTOR TGA9 9 173 - -
Cpe01g01198 303 Pfam Basic region leucine zipper 56 102 IPR004827 GO:0003700|GO:0006355
Cpe01g01198 303 Coils Coil 79 106 - -
Cpe01g01198 303 SMART brlzneu 56 119 IPR004827 GO:0003700|GO:0006355
Cpe01g01198 303 MobiDBLite consensus disorder prediction 48 62 - -
Cpe01g01198 303 Pfam Seed dormancy control 142 174 IPR025422 GO:0006351|GO:0043565
Cpe01g01198 303 ProSiteProfiles DOG1 domain profile. 75 300 IPR025422 GO:0006351|GO:0043565
Cpe01g01198 303 MobiDBLite consensus disorder prediction 43 62 - -
Cpe01g01198 303 Coils Coil 136 156 - -
Cpe01g01198 303 SUPERFAMILY Leucine zipper domain 60 103 IPR046347 GO:0003700|GO:0006355
Cpe01g01198 303 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 63 78 IPR004827 GO:0003700|GO:0006355
Cpe01g01198 303 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 173 303 - -
Cpe01g01198 303 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 9 173 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01198 Cpe09g00455 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01198 Cpe-Chr1:7130946 Cpe07g00106 Cpe-Chr7:547250 3.33E-163 dispersed
Cpe01g01198 Cpe-Chr1:7130946 Cpe09g00455 Cpe-Chr9:2944075 8.10E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48830 PF07716 bZIP_2 4.20E-07 CL0018 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01198 K14431 - csv:101216885 462.611