Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01210 ATGAATTTTCCTTCGTTTTCCGTTGAATCTTCCCCTGTTTGCATCCTCTGTGGTTCAAGCTGTTGGAGTTTTCCTAGGCGTATTTCGAGAGTCAAGTTTCCGCTTATGAGTTTGGATTCATTTTTTCCAGAAATGTCAGCCAAGTTACAACAGATTGATCAAAAGGGTGGTGGTTCAGGTACCCAGAAAAGGCTGAAGGATCTCACATCTCAGTCTGCCAATAAATTCTGTGCAGATTGTGGGTCTCCAGATCCAAAATGGGTGTCTTTGAATTTGGGGGCATTTATTTGCATCAAGTGTTCTGGAGTACACCGAAGCCTCGGAGTGCATATATCTAAGGTTCTTTCAGTGAAGCTAGATGATTGGACGGATGAACAAGTTGATGCTTTGACGAGTATAGGTGGAAATACTGCCGTAAACAAAAAGTACGAAGTTTTCATCCCAGACAGCGATAAGAAACCAAAACCAGACTCATCCATAGAGGAGCGTTTGGATTTTATAAGGAAAAAATATGAGCTACTGCAATTCGCAAGTCTTGACGACCAGATTTTCTGTCCTTTTCCACCCCCGCAGAAGAAATCATCATTCTGGCATAGCATTTCTTATAATGGAAGCGAAGAAAGAAGGAATTACGAAAAACTACCGACAAAAACTCGAATCGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTGTGAACCGAAGAACAGCAAAAAGGGAAATGCATTGGTATTAAGCAGCTCAATGGCAGGTATGATTGAATTCGTTGGTTTAATTAAGGTCAACGTAGTTAGAGGAACCAATTTAGCTATCAGGGATATGGTGACAAGCGACCCATATGTAATTCTCTCGTTGGGCAACCAATCAGTGAAGACACGAGTCATCAAGAGCAGTTTGAATCCAGTGTGGAACGAGAGCCTAATGCTGTCAATTCCTGATCACATTCCTCCATTAAGAGTGATTGTGTATGACAAAGACACATTTTCAACCGATGACTTCATGGGTGAAGCAGAAATTGATATCAATCCACTGCTCACGGCAGCCCAAGCCTGTGAGAGATCCACAGTCAGTGAACCGATGCAGCTAGGAAAATGGGTAGCATGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCACTCTTGTAGATGGGAAGATCCGACAAGACATCTCTTTGAAGCTGCAGAACGTCGAACGAGGCGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG 1245 43.21 MNFPSFSVESSPVCILCGSSCWSFPRRISRVKFPLMSLDSFFPEMSAKLQQIDQKGGGSGTQKRLKDLTSQSANKFCADCGSPDPKWVSLNLGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALTSIGGNTAVNKKYEVFIPDSDKKPKPDSSIEERLDFIRKKYELLQFASLDDQIFCPFPPPQKKSSFWHSISYNGSEERRNYEKLPTKTRIGSAFRNSWGRKDCEPKNSKKGNALVLSSSMAGMIEFVGLIKVNVVRGTNLAIRDMVTSDPYVILSLGNQSVKTRVIKSSLNPVWNESLMLSIPDHIPPLRVIVYDKDTFSTDDFMGEAEIDINPLLTAAQACERSTVSEPMQLGKWVACKENTLAKDGIITLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ 414
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 7221217 7224825 - Cp4.1LG01g14960.1 Cpe01g01210 462523
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01210 414 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 50 414 - -
Cpe01g01210 414 SMART arf_gap_3 62 184 IPR001164 GO:0005096
Cpe01g01210 414 ProSiteProfiles C2 domain profile. 240 356 IPR000008 -
Cpe01g01210 414 SUPERFAMILY ArfGap/RecO-like zinc finger 62 177 IPR037278 -
Cpe01g01210 414 CDD C2_ArfGAP 257 401 - -
Cpe01g01210 414 Pfam Putative GTPase activating protein for Arf 63 177 IPR001164 GO:0005096
Cpe01g01210 414 SMART C2_3c 259 354 IPR000008 -
Cpe01g01210 414 CDD ArfGap 65 171 - -
Cpe01g01210 414 Pfam C2 domain 259 351 IPR000008 -
Cpe01g01210 414 Gene3D C2 domain 257 412 IPR035892 -
Cpe01g01210 414 ProSiteProfiles ARF GTPase-activating proteins domain profile. 62 176 IPR001164 GO:0005096
Cpe01g01210 414 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 257 351 IPR035892 -
Cpe01g01210 414 Gene3D Arf GTPase activating protein 46 183 IPR038508 -
Cpe01g01210 414 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 50 414 IPR044518 GO:0005096|GO:0005543
Cpe01g01210 414 PRINTS HIV Rev interacting protein signature 74 93 IPR001164 GO:0005096
Cpe01g01210 414 PRINTS HIV Rev interacting protein signature 93 110 IPR001164 GO:0005096
Cpe01g01210 414 PRINTS HIV Rev interacting protein signature 114 135 IPR001164 GO:0005096
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01210 Cpe-Chr1:7221217 Cpe09g00441 Cpe-Chr9:2825759 0 dispersed
Cpe01g01210 Cpe-Chr1:7221217 Cpe01g01923 Cpe-Chr1:16392230 9.18E-178 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01210 K12486 - csv:101221541 647.121