Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g01210 | ATGAATTTTCCTTCGTTTTCCGTTGAATCTTCCCCTGTTTGCATCCTCTGTGGTTCAAGCTGTTGGAGTTTTCCTAGGCGTATTTCGAGAGTCAAGTTTCCGCTTATGAGTTTGGATTCATTTTTTCCAGAAATGTCAGCCAAGTTACAACAGATTGATCAAAAGGGTGGTGGTTCAGGTACCCAGAAAAGGCTGAAGGATCTCACATCTCAGTCTGCCAATAAATTCTGTGCAGATTGTGGGTCTCCAGATCCAAAATGGGTGTCTTTGAATTTGGGGGCATTTATTTGCATCAAGTGTTCTGGAGTACACCGAAGCCTCGGAGTGCATATATCTAAGGTTCTTTCAGTGAAGCTAGATGATTGGACGGATGAACAAGTTGATGCTTTGACGAGTATAGGTGGAAATACTGCCGTAAACAAAAAGTACGAAGTTTTCATCCCAGACAGCGATAAGAAACCAAAACCAGACTCATCCATAGAGGAGCGTTTGGATTTTATAAGGAAAAAATATGAGCTACTGCAATTCGCAAGTCTTGACGACCAGATTTTCTGTCCTTTTCCACCCCCGCAGAAGAAATCATCATTCTGGCATAGCATTTCTTATAATGGAAGCGAAGAAAGAAGGAATTACGAAAAACTACCGACAAAAACTCGAATCGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTGTGAACCGAAGAACAGCAAAAAGGGAAATGCATTGGTATTAAGCAGCTCAATGGCAGGTATGATTGAATTCGTTGGTTTAATTAAGGTCAACGTAGTTAGAGGAACCAATTTAGCTATCAGGGATATGGTGACAAGCGACCCATATGTAATTCTCTCGTTGGGCAACCAATCAGTGAAGACACGAGTCATCAAGAGCAGTTTGAATCCAGTGTGGAACGAGAGCCTAATGCTGTCAATTCCTGATCACATTCCTCCATTAAGAGTGATTGTGTATGACAAAGACACATTTTCAACCGATGACTTCATGGGTGAAGCAGAAATTGATATCAATCCACTGCTCACGGCAGCCCAAGCCTGTGAGAGATCCACAGTCAGTGAACCGATGCAGCTAGGAAAATGGGTAGCATGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCACTCTTGTAGATGGGAAGATCCGACAAGACATCTCTTTGAAGCTGCAGAACGTCGAACGAGGCGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG | 1245 | 43.21 | MNFPSFSVESSPVCILCGSSCWSFPRRISRVKFPLMSLDSFFPEMSAKLQQIDQKGGGSGTQKRLKDLTSQSANKFCADCGSPDPKWVSLNLGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALTSIGGNTAVNKKYEVFIPDSDKKPKPDSSIEERLDFIRKKYELLQFASLDDQIFCPFPPPQKKSSFWHSISYNGSEERRNYEKLPTKTRIGSAFRNSWGRKDCEPKNSKKGNALVLSSSMAGMIEFVGLIKVNVVRGTNLAIRDMVTSDPYVILSLGNQSVKTRVIKSSLNPVWNESLMLSIPDHIPPLRVIVYDKDTFSTDDFMGEAEIDINPLLTAAQACERSTVSEPMQLGKWVACKENTLAKDGIITLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ | 414 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7221217 | 7224825 | - | Cp4.1LG01g14960.1 | Cpe01g01210 | 462523 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g01210 | 414 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED | 50 | 414 | - | - | |
Cpe01g01210 | 414 | SMART | arf_gap_3 | 62 | 184 | IPR001164 | GO:0005096 | |
Cpe01g01210 | 414 | ProSiteProfiles | C2 domain profile. | 240 | 356 | IPR000008 | - | |
Cpe01g01210 | 414 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 62 | 177 | IPR037278 | - | |
Cpe01g01210 | 414 | CDD | C2_ArfGAP | 257 | 401 | - | - | |
Cpe01g01210 | 414 | Pfam | Putative GTPase activating protein for Arf | 63 | 177 | IPR001164 | GO:0005096 | |
Cpe01g01210 | 414 | SMART | C2_3c | 259 | 354 | IPR000008 | - | |
Cpe01g01210 | 414 | CDD | ArfGap | 65 | 171 | - | - | |
Cpe01g01210 | 414 | Pfam | C2 domain | 259 | 351 | IPR000008 | - | |
Cpe01g01210 | 414 | Gene3D | C2 domain | 257 | 412 | IPR035892 | - | |
Cpe01g01210 | 414 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 62 | 176 | IPR001164 | GO:0005096 | |
Cpe01g01210 | 414 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 257 | 351 | IPR035892 | - | |
Cpe01g01210 | 414 | Gene3D | Arf GTPase activating protein | 46 | 183 | IPR038508 | - | |
Cpe01g01210 | 414 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 50 | 414 | IPR044518 | GO:0005096|GO:0005543 | |
Cpe01g01210 | 414 | PRINTS | HIV Rev interacting protein signature | 74 | 93 | IPR001164 | GO:0005096 | |
Cpe01g01210 | 414 | PRINTS | HIV Rev interacting protein signature | 93 | 110 | IPR001164 | GO:0005096 | |
Cpe01g01210 | 414 | PRINTS | HIV Rev interacting protein signature | 114 | 135 | IPR001164 | GO:0005096 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g01210 | Cpe-Chr1:7221217 | Cpe09g00441 | Cpe-Chr9:2825759 | 0 | dispersed | |
Cpe01g01210 | Cpe-Chr1:7221217 | Cpe01g01923 | Cpe-Chr1:16392230 | 9.18E-178 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g01210 | K12486 | - | csv:101221541 | 647.121 |