Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g01211 | ATGGAAAAGACGCTCCTCCTCCTCCCCTTTCTCTCTCTCCCATGCTTTAATTTGAATTCTCTCGGCTCCCAAACGCGGTTTTCGTCGCATCCCTTTGTGTATTATCATCCCTTTTTGGCGCTGTTTATTGTCGTACCACAATCAAACTTGCCGTCCACCCAGATTCTTTGGTGGGGCATTTTATTGATAAAAATGTCATCTGCAAATCCTTATTTTGATGACGTTCGGACCAAACCTGAGGTTATTGATCCTCCACAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAGCCTAACGTGGCTGTCTCGAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCTATTCATCAGTGTTCGAATGGTCACACATTGTGTTCGGGATGCAAGCCGAGGGTGCACAACCGGTGTCCGACCTGCAGGCATGAACTCGGGAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTGGGCATATACCCTTACTACAGCAAGCTGAAACATGAATCTCAGTGTGTATATCGACCCTATAACTGTCCTTATGCGGGGTCGGAATGCACGGTTGTTGGCGATATTCCGTTTTTGGTAGCTCACCTCAAGGACGATCACAAAGTCGACATGCATAATGGAAGCACTTTCAATCACCGATACGTCAAGTCAAATCCGCAAGAGGTCGAAAATGCCACGTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTTCAGCTCGGGATGGCACCGGTGTACATAGCTTTCTTGCGGTTTATGGGGGACGATAATGAAGCGAAGAACTACAGTTATAGTCTAGAGGTGGGTGGAAATGGGAGGAAGACGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTACGAGACAGCTTTGACGGGCTTATTATCCAACGTAACATGGCGCTGTTCTTCTCGGGGGGAGATCGGAAAGAATTGAAGCTGAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAG | 1110 | 46.76 | MEKTLLLLPFLSLPCFNLNSLGSQTRFSSHPFVYYHPFLALFIVVPQSNLPSTQILWWGILLIKMSSANPYFDDVRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVVGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKTVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ | 369 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7225520 | 7228986 | - | Cp4.1LG01g14980.1 | Cpe01g01211 | 462524 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g01211 | 369 | ProSiteProfiles | Zinc finger RING-type profile. | 121 | 157 | IPR001841 | - | |
Cpe01g01211 | 369 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 174 | 229 | IPR013083 | - | |
Cpe01g01211 | 369 | Pfam | Seven in absentia protein family | 163 | 362 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Cpe01g01211 | 369 | SUPERFAMILY | TRAF domain-like | 174 | 366 | - | - | |
Cpe01g01211 | 369 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 173 | IPR013083 | - | |
Cpe01g01211 | 369 | MobiDBLite | consensus disorder prediction | 81 | 108 | - | - | |
Cpe01g01211 | 369 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 230 | 362 | IPR008974 | GO:0005515 | |
Cpe01g01211 | 369 | CDD | Sina | 235 | 363 | - | - | |
Cpe01g01211 | 369 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 71 | 369 | - | - | |
Cpe01g01211 | 369 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE DIS1 | 71 | 369 | - | - | |
Cpe01g01211 | 369 | CDD | RING-HC_SIAHs | 119 | 157 | - | - | |
Cpe01g01211 | 369 | ProSiteProfiles | Zinc finger SIAH-type profile. | 174 | 234 | IPR013010 | GO:0008270 | |
Cpe01g01211 | 369 | SUPERFAMILY | RING/U-box | 113 | 161 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g01211 | Cpe-Chr1:7225520 | Cpe13g00488 | Cpe-Chr13:5045754 | 0 | dispersed | |
Cpe01g01211 | Cpe-Chr1:7225520 | Cpe09g00442 | Cpe-Chr9:2830330 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g01211 | K04506 | - | csv:101205198 | 625.165 |