Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01211 ATGGAAAAGACGCTCCTCCTCCTCCCCTTTCTCTCTCTCCCATGCTTTAATTTGAATTCTCTCGGCTCCCAAACGCGGTTTTCGTCGCATCCCTTTGTGTATTATCATCCCTTTTTGGCGCTGTTTATTGTCGTACCACAATCAAACTTGCCGTCCACCCAGATTCTTTGGTGGGGCATTTTATTGATAAAAATGTCATCTGCAAATCCTTATTTTGATGACGTTCGGACCAAACCTGAGGTTATTGATCCTCCACAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAGCCTAACGTGGCTGTCTCGAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCTATTCATCAGTGTTCGAATGGTCACACATTGTGTTCGGGATGCAAGCCGAGGGTGCACAACCGGTGTCCGACCTGCAGGCATGAACTCGGGAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTGGGCATATACCCTTACTACAGCAAGCTGAAACATGAATCTCAGTGTGTATATCGACCCTATAACTGTCCTTATGCGGGGTCGGAATGCACGGTTGTTGGCGATATTCCGTTTTTGGTAGCTCACCTCAAGGACGATCACAAAGTCGACATGCATAATGGAAGCACTTTCAATCACCGATACGTCAAGTCAAATCCGCAAGAGGTCGAAAATGCCACGTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTTCAGCTCGGGATGGCACCGGTGTACATAGCTTTCTTGCGGTTTATGGGGGACGATAATGAAGCGAAGAACTACAGTTATAGTCTAGAGGTGGGTGGAAATGGGAGGAAGACGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTACGAGACAGCTTTGACGGGCTTATTATCCAACGTAACATGGCGCTGTTCTTCTCGGGGGGAGATCGGAAAGAATTGAAGCTGAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAG 1110 46.76 MEKTLLLLPFLSLPCFNLNSLGSQTRFSSHPFVYYHPFLALFIVVPQSNLPSTQILWWGILLIKMSSANPYFDDVRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVVGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKTVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7225520 7228986 - Cp4.1LG01g14980.1 Cpe01g01211 462524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01211 369 ProSiteProfiles Zinc finger RING-type profile. 121 157 IPR001841 -
Cpe01g01211 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 229 IPR013083 -
Cpe01g01211 369 Pfam Seven in absentia protein family 163 362 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cpe01g01211 369 SUPERFAMILY TRAF domain-like 174 366 - -
Cpe01g01211 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 173 IPR013083 -
Cpe01g01211 369 MobiDBLite consensus disorder prediction 81 108 - -
Cpe01g01211 369 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 230 362 IPR008974 GO:0005515
Cpe01g01211 369 CDD Sina 235 363 - -
Cpe01g01211 369 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 71 369 - -
Cpe01g01211 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 71 369 - -
Cpe01g01211 369 CDD RING-HC_SIAHs 119 157 - -
Cpe01g01211 369 ProSiteProfiles Zinc finger SIAH-type profile. 174 234 IPR013010 GO:0008270
Cpe01g01211 369 SUPERFAMILY RING/U-box 113 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01211 Cpe-Chr1:7225520 Cpe13g00488 Cpe-Chr13:5045754 0 dispersed
Cpe01g01211 Cpe-Chr1:7225520 Cpe09g00442 Cpe-Chr9:2830330 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01211 K04506 - csv:101205198 625.165