Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01250 ATGGGTCGGTCGGAGAAGGAGTTGAAAGATTTGGTGGTGGCTCAACTGCCGGAGTTTGTGAGGGAGATTTCGGAGCTTGCTGAGTGCAATGGCGTGTGTAAGAAGATGTATGGGGAGCTGATTCGAAGAGTCAAGTTGTTGAGTCCTATGTTTGAGGAATTGAGAGATGGAGAAGAAGAGCTTGGATTAGATGTTCTTAAGGGCTTGGAGTTGCTTAAAACTCCTTTGGATTCTGCTATGGAGCTTCTTAGGTCGGTCAACCGAGGTAGCAAGCTCTATCAGGCTTTGCAATTGGAGAAAATAGTATTTGAGTTTCAACATACGACAGAAGATATTGCAGCAGCACTTAACAAGCTTCCCATCGACGAGCTCGGGATCCCAGACGAGGTTCGGGAACAGATTGAACTTGTTCAATCCCAATTCAAACGAGCGAAGGGGAGATTACATTTAGCTGATGCACAGTTAGACAAGGATTTAACCATATTACAGGAAGAAAAAGATCCTGACCTTGAAATGTTAAAAAAACTTTCTGAAAAGTTGCATCTTCGGACTGTAAACGATCTGAAGAAAGAGTCTCTAGCGATCCATGAGCTGGTGATCTCGAGCGATGGAGACCCAGGGGATGTTTTCGGAAAAATGTCATCCATTTTAAAGAAGCTGAAGAATTTTGTACAAACAGAAAACCCAGAAGTTGAAACTTCCCAAGATAAAAAAAGTATCATTATTAAACACAGATCTCCTGTCATCCCAGACGATTTTAGATGCCCCATATCTCTTGAATTGATGAGGGATCCCGTCATCGTCTCAACCGGGCAGACTTATGAGAGATCCTGCATTCAGAAATGGTTGGATGCAGGGCACATAACGTGTCCAAAATCTCAGCAGGTTTTAGTCCGTACAGCCTTAACCCCAAATTACGTTTTGAAGAGCCTGATTGCTCTGTGGTGTGATAACAATGGCGTTGAACTGCCAAGCAAGCAAGGTAGCTGTGTAAACAAGAAACCTGGAAATAGTATTTCAGACTGTGATCGGGCGGCCATCGATGCCTTACTGGTAAAACTGGTAAATGGATCTCCAGAACAGAAAAGATCAGCTGCAGGTGAGCTCCGGTTACTAGCGAAGAGGAATTCGGATAACCGAATCTGTATTGCCGAGGCAGGAGCCATTCCATTCCTTGTCGAACTATTATCCTCAAATGATACTAGGACCAAGGAGCATGCAGTTACAGCAATGTTGAATCTTTCAATCAACGATGGTAATAAAAGAACGATAGTCGATTTACGAGCCATACCTGCCATAGTAGAAGTGTTGAAGAATGGCAGTATGGAGGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGCTTATCCGTTATCGACGAGAACAAGGTTGCGATCGGAGCAGCCGGGGCAATTCCTGCTCTTATCAGTTTGCTTTGTGAAGGTACACCCAGAGGGAAGAAGGATGCAGCCGCTGCTATTTTCAATCTTTCAATCTATCAAGGAAACAAAGCTAGAGCAGTAAGAGCAGGCATTGTTAATCCACTTATGGGATTTCTGAAAGATGCTGGAGGTGGCATGGTGGATGAAGCTCTAGCCATTTTGGCCATTCTTGCAACTCACCATGAAGGGAAGATGGCAATAAGGCAAACTGAGCCGACAGCGATTCTTTTAGAGTTCATCAGAACCAGTTCTCCACGAAACCAGGAGAATGCTGCTGCTGTGTTGTGGTCGCTTTGCAGTACTGATTTTGAGCAGTTGAAGGTAGCTAGGGAACATGGTGCAGAAGTGGCATTAAAGGAAGTATCTGAGAATGGGACAGAAAGAGCAAAGAGGAAAGCAGGAAGCATTCTAGAGCTCTTTCAACTCTTTGATGAACCATCTGCTAATCTATAA 1893 44.27 MGRSEKELKDLVVAQLPEFVREISELAECNGVCKKMYGELIRRVKLLSPMFEELRDGEEELGLDVLKGLELLKTPLDSAMELLRSVNRGSKLYQALQLEKIVFEFQHTTEDIAAALNKLPIDELGIPDEVREQIELVQSQFKRAKGRLHLADAQLDKDLTILQEEKDPDLEMLKKLSEKLHLRTVNDLKKESLAIHELVISSDGDPGDVFGKMSSILKKLKNFVQTENPEVETSQDKKSIIIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHITCPKSQQVLVRTALTPNYVLKSLIALWCDNNGVELPSKQGSCVNKKPGNSISDCDRAAIDALLVKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTKEHAVTAMLNLSINDGNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLCEGTPRGKKDAAAAIFNLSIYQGNKARAVRAGIVNPLMGFLKDAGGGMVDEALAILAILATHHEGKMAIRQTEPTAILLEFIRTSSPRNQENAAAVLWSLCSTDFEQLKVAREHGAEVALKEVSENGTERAKRKAGSILELFQLFDEPSANL 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7485832 7488438 + Cp4.1LG01g14640.1 Cpe01g01250 462563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01250 630 Pfam U-box domain 249 319 IPR003613 GO:0004842|GO:0016567
Cpe01g01250 630 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 13 622 - -
Cpe01g01250 630 PANTHER U BOX DOMAIN-CONTAINING 13 622 - -
Cpe01g01250 630 SUPERFAMILY RING/U-box 249 323 - -
Cpe01g01250 630 ProSiteProfiles U-box domain profile. 248 322 IPR003613 GO:0004842|GO:0016567
Cpe01g01250 630 Gene3D - 421 524 IPR011989 -
Cpe01g01250 630 Pfam Armadillo/beta-catenin-like repeat 417 456 IPR000225 GO:0005515
Cpe01g01250 630 Pfam Armadillo/beta-catenin-like repeat 459 497 IPR000225 GO:0005515
Cpe01g01250 630 Pfam Armadillo/beta-catenin-like repeat 376 415 IPR000225 GO:0005515
Cpe01g01250 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 387 429 IPR000225 GO:0005515
Cpe01g01250 630 SMART arm_5 499 539 IPR000225 GO:0005515
Cpe01g01250 630 SMART arm_5 376 416 IPR000225 GO:0005515
Cpe01g01250 630 SMART arm_5 540 580 IPR000225 GO:0005515
Cpe01g01250 630 SMART arm_5 417 457 IPR000225 GO:0005515
Cpe01g01250 630 SMART arm_5 458 498 IPR000225 GO:0005515
Cpe01g01250 630 Gene3D - 12 122 IPR036537 GO:0007166
Cpe01g01250 630 Gene3D - 339 420 IPR011989 -
Cpe01g01250 630 SMART Ubox_2 252 315 IPR003613 GO:0004842|GO:0016567
Cpe01g01250 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 322 IPR013083 -
Cpe01g01250 630 Gene3D - 525 626 IPR011989 -
Cpe01g01250 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515
Cpe01g01250 630 SUPERFAMILY ARM repeat 344 620 IPR016024 -
Cpe01g01250 630 CDD RING-Ubox_PUB 253 295 IPR045210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01250 Cpe09g00408 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01250 Cpe-Chr1:7485832 Cpe02g01239 Cpe-Chr2:11139117 0 dispersed
Cpe01g01250 Cpe-Chr1:7485832 Cpe09g00408 Cpe-Chr9:2564268 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01250 - - csv:101221065 1016.14