Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g01256 | ATGTCTGGTTCTTCTGCTGCTTCTTTCAATCTTACATTACCCCATCAGCATCCTGACCCTGACTCTGTTGCTGATGAACTTCAAAGGACAGTCAATGCATCTGTATGGAGAAGACAAATGCTGTCCGAATCGAAGGATCAAACTTCCTCTTGCCTCACCGGAAACCCCATCGACGATTGCTGGCGGTGCGACCCGAATTGGGCGGCGAACCGGCAGCGACTAGCTGACTGTGGTATCGGGTTCGGCCGCGACGCCATGGGTGGCAAAGGCGGCAAAATCTACATCGTTACCGACTCGTCGGATTCGGATCCGACGAACCCCACTCCGGGAACTCTCCGCCACGCTGTGATCCAATTCGAACCCCTGTGGATAATCTTCTCCGCCGACATGAACATCAAGCTCAAATACGAACTTATCATCAACAACTTCAAAACCATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGCGGATGCATCACCATCCATTCCGTGTCCAATATCATCATCCACAACATCCACGTGCACCACTGCAAACCCTCCGGCAATGCCAACATAAGGTCGACCCCGAGCCATGTGGGGCATTGGGGGCTATCGGACGGAGATGGGATATCGATATTTGACTCGAGGAAGATTTGGATCGACCATTGCTCGCTTTCATACTGCAAAGATGGGCTGATAGATGCAACAATGGGATCGACGGGGATAACAATATCAAACAGCTACTTCTCGCACCATGACAAGGTGATGCTGTTGGGGCACGACGACAAGTACACGCAGGACTCAGGGATGCAAGTCACCATTGCGTTCAACCACTTCGGCGAGGCGCTGAGCCAACGCATGCCGCGTTGTAGGTATGGCTACATTCATGTCGTCAACAATGATTTCACCGCTTGGGAAATGTATGCCATTGGCGGCAGTGCCCGCCCAACCATTAACAGTCAGGGCAACCGTTACACCGCGCCGGTGGACCCTAATGCCAAAGAGGTGACGAAACGTTTAGACACGGCGGAGACGGAGTGGGCGGCGTGGAATTGGCGGTCGGAGGGTGATATTTTGGTGAACGGCGCGTTTTTTGTGCCGTCTGGTGCCGGACTTAGCACCCAGTACGGTAAGGCCTCCAGCGTCGAGCCTAAGTCGGTGGCTCTCATCAATCAGCTCACTATGAACGCCGGCGTTTTCGGCGCCCCCAGGTAA | 1200 | 54.33 | MSGSSAASFNLTLPHQHPDPDSVADELQRTVNASVWRRQMLSESKDQTSSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDSDPTNPTPGTLRHAVIQFEPLWIIFSADMNIKLKYELIINNFKTIDGRGANVHITGGGCITIHSVSNIIIHNIHVHHCKPSGNANIRSTPSHVGHWGLSDGDGISIFDSRKIWIDHCSLSYCKDGLIDATMGSTGITISNSYFSHHDKVMLLGHDDKYTQDSGMQVTIAFNHFGEALSQRMPRCRYGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYTAPVDPNAKEVTKRLDTAETEWAAWNWRSEGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVFGAPR | 399 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7517844 | 7519786 | - | Cp4.1LG01g14590.1 | Cpe01g01256 | 462569 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g01256 | 399 | SUPERFAMILY | Pectin lyase-like | 44 | 371 | IPR011050 | - | |
Cpe01g01256 | 399 | PRINTS | Pollen allergen Amb family signature | 77 | 94 | IPR018082 | - | |
Cpe01g01256 | 399 | PRINTS | Pollen allergen Amb family signature | 137 | 153 | IPR018082 | - | |
Cpe01g01256 | 399 | PRINTS | Pollen allergen Amb family signature | 303 | 322 | IPR018082 | - | |
Cpe01g01256 | 399 | PRINTS | Pollen allergen Amb family signature | 374 | 397 | IPR018082 | - | |
Cpe01g01256 | 399 | PRINTS | Pollen allergen Amb family signature | 281 | 300 | IPR018082 | - | |
Cpe01g01256 | 399 | PRINTS | Pollen allergen Amb family signature | 101 | 126 | IPR018082 | - | |
Cpe01g01256 | 399 | PRINTS | Pollen allergen Amb family signature | 345 | 369 | IPR018082 | - | |
Cpe01g01256 | 399 | PRINTS | Pollen allergen Amb family signature | 201 | 222 | IPR018082 | - | |
Cpe01g01256 | 399 | Gene3D | - | 54 | 396 | IPR012334 | - | |
Cpe01g01256 | 399 | PANTHER | PECTATE LYASE 18-RELATED | 6 | 397 | IPR045032 | GO:0030570 | |
Cpe01g01256 | 399 | Pfam | Pectate lyase | 138 | 318 | IPR002022 | - | |
Cpe01g01256 | 399 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cpe01g01256 | 399 | PANTHER | PECTATE LYASE | 6 | 397 | - | - | |
Cpe01g01256 | 399 | SMART | amb_all | 129 | 326 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g01256 | Cpe-Chr1:7517844 | Cpe10g00244 | Cpe-Chr10:1418792 | 0 | dispersed | |
Cpe19g00380 | Cpe-Chr19:3407174 | Cpe01g01256 | Cpe-Chr1:7517844 | 3.74E-48 | dispersed | |
Cpe01g01256 | Cpe-Chr1:7517844 | Cpe01g02212 | Cpe-Chr1:18815530 | 0 | wgd | |
Cpe01g01256 | Cpe-Chr1:7517844 | Cpe13g00765 | Cpe-Chr13:6983856 | 0 | wgd | |
Cpe01g01256 | Cpe-Chr1:7517844 | Cpe09g00403 | Cpe-Chr9:2530200 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g01256 | K01728 | - | csv:101205739 | 758.829 |