Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01256 ATGTCTGGTTCTTCTGCTGCTTCTTTCAATCTTACATTACCCCATCAGCATCCTGACCCTGACTCTGTTGCTGATGAACTTCAAAGGACAGTCAATGCATCTGTATGGAGAAGACAAATGCTGTCCGAATCGAAGGATCAAACTTCCTCTTGCCTCACCGGAAACCCCATCGACGATTGCTGGCGGTGCGACCCGAATTGGGCGGCGAACCGGCAGCGACTAGCTGACTGTGGTATCGGGTTCGGCCGCGACGCCATGGGTGGCAAAGGCGGCAAAATCTACATCGTTACCGACTCGTCGGATTCGGATCCGACGAACCCCACTCCGGGAACTCTCCGCCACGCTGTGATCCAATTCGAACCCCTGTGGATAATCTTCTCCGCCGACATGAACATCAAGCTCAAATACGAACTTATCATCAACAACTTCAAAACCATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGCGGATGCATCACCATCCATTCCGTGTCCAATATCATCATCCACAACATCCACGTGCACCACTGCAAACCCTCCGGCAATGCCAACATAAGGTCGACCCCGAGCCATGTGGGGCATTGGGGGCTATCGGACGGAGATGGGATATCGATATTTGACTCGAGGAAGATTTGGATCGACCATTGCTCGCTTTCATACTGCAAAGATGGGCTGATAGATGCAACAATGGGATCGACGGGGATAACAATATCAAACAGCTACTTCTCGCACCATGACAAGGTGATGCTGTTGGGGCACGACGACAAGTACACGCAGGACTCAGGGATGCAAGTCACCATTGCGTTCAACCACTTCGGCGAGGCGCTGAGCCAACGCATGCCGCGTTGTAGGTATGGCTACATTCATGTCGTCAACAATGATTTCACCGCTTGGGAAATGTATGCCATTGGCGGCAGTGCCCGCCCAACCATTAACAGTCAGGGCAACCGTTACACCGCGCCGGTGGACCCTAATGCCAAAGAGGTGACGAAACGTTTAGACACGGCGGAGACGGAGTGGGCGGCGTGGAATTGGCGGTCGGAGGGTGATATTTTGGTGAACGGCGCGTTTTTTGTGCCGTCTGGTGCCGGACTTAGCACCCAGTACGGTAAGGCCTCCAGCGTCGAGCCTAAGTCGGTGGCTCTCATCAATCAGCTCACTATGAACGCCGGCGTTTTCGGCGCCCCCAGGTAA 1200 54.33 MSGSSAASFNLTLPHQHPDPDSVADELQRTVNASVWRRQMLSESKDQTSSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDSDPTNPTPGTLRHAVIQFEPLWIIFSADMNIKLKYELIINNFKTIDGRGANVHITGGGCITIHSVSNIIIHNIHVHHCKPSGNANIRSTPSHVGHWGLSDGDGISIFDSRKIWIDHCSLSYCKDGLIDATMGSTGITISNSYFSHHDKVMLLGHDDKYTQDSGMQVTIAFNHFGEALSQRMPRCRYGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYTAPVDPNAKEVTKRLDTAETEWAAWNWRSEGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVFGAPR 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7517844 7519786 - Cp4.1LG01g14590.1 Cpe01g01256 462569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01256 399 SUPERFAMILY Pectin lyase-like 44 371 IPR011050 -
Cpe01g01256 399 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Cpe01g01256 399 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Cpe01g01256 399 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Cpe01g01256 399 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Cpe01g01256 399 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Cpe01g01256 399 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Cpe01g01256 399 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Cpe01g01256 399 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Cpe01g01256 399 Gene3D - 54 396 IPR012334 -
Cpe01g01256 399 PANTHER PECTATE LYASE 18-RELATED 6 397 IPR045032 GO:0030570
Cpe01g01256 399 Pfam Pectate lyase 138 318 IPR002022 -
Cpe01g01256 399 MobiDBLite consensus disorder prediction 1 23 - -
Cpe01g01256 399 PANTHER PECTATE LYASE 6 397 - -
Cpe01g01256 399 SMART amb_all 129 326 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01256 Cpe-Chr1:7517844 Cpe10g00244 Cpe-Chr10:1418792 0 dispersed
Cpe19g00380 Cpe-Chr19:3407174 Cpe01g01256 Cpe-Chr1:7517844 3.74E-48 dispersed
Cpe01g01256 Cpe-Chr1:7517844 Cpe01g02212 Cpe-Chr1:18815530 0 wgd
Cpe01g01256 Cpe-Chr1:7517844 Cpe13g00765 Cpe-Chr13:6983856 0 wgd
Cpe01g01256 Cpe-Chr1:7517844 Cpe09g00403 Cpe-Chr9:2530200 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01256 K01728 - csv:101205739 758.829