Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01265 ATGAACTGTCTTCAAAACCTTTCAATTCTTATTTTCTCTCCGAGTTTCAGATCATCATCTTTGCCGTTCCAGAGCTTCAAATGCCGACAGAGAAAGCCTGAATTCCAGCTCCGGAATCTGGTGATAAGGAACTTTGCGGATCTACACCGACGTTTTACCGTGAAGGCAGTATCTGGCTCTACATCAAGTGCCGAAATGAGTGGAGCTGAAGTTGATGATCCCGAGGCAGAGGAGGAAAAATCTGAAATATATAGCCATAACATGACAGAAGCTATGGGGGCTGTATTGACATATAGACATGAGCTGGGAATGAACTACAACTTCATTCGTCCAGATTTAATTGTAGGATCGTGCCTACAGACTCCAGAGGATGTTGACAAGCTTCGCAGCATTGGAGTAAAAACAATTTTCTGCTTGCAGCAAGACCCTGATTTGGAATATTTTGGGGTTGACATTGGTGCTATAATAGCATATACAAAGACGTTTGATGATATTGAACATTTGCGAGCTCAGATAAGGGATTTTGATGCATTCGACCTACGGCTAAGGTTACCAGCTGTTGTAAGTAAATTGCATAAAGCCATAAACCGAAATGGTGGAGTGGCTTACATACATTGCACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCGATGGCATACATGTTCTGGGTTCAAGGCTACACACTCAATGAGGCTTTAGAATTACTGCTGAGCAAACGCTCATGCTTCCCAAAAATAGATGCTATTAAAAGTGCAACGGCCGATATTCTTTCAGGATTTAAAAACAAGCCTGTCACTTTATCATGGGAGAATCACCAATGCTCAACTGTAGAAGTATCTGGGCTTGATATTGGATGGGGCCAGAGAATTCCATTAAAATTCGACAAGGAACGAGGTGCATGGATTCTCAATAAGGAACTGCCGGAAGGACGATACGAATACAAGTACATTATTGATGGTGTATGGACATGCAACGAAAACGAGCCGGTCACTCCACCCAACAAAGATGGCCACGTCAACAATTTCATTGAAGTGGTTGAAGATGAGGATCCAGGTAGTGATAGAACCATTCTTCGGGCAAGATTAACCGGAGATGAACCAGAACTCACGACCGAAGAAAGAAGCAAAATAATACAATTTCTAGAAGATTGCCCAGATGAAAATTGA 1167 42.59 MNCLQNLSILIFSPSFRSSSLPFQSFKCRQRKPEFQLRNLVIRNFADLHRRFTVKAVSGSTSSAEMSGAEVDDPEAEEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRSIGVKTIFCLQQDPDLEYFGVDIGAIIAYTKTFDDIEHLRAQIRDFDAFDLRLRLPAVVSKLHKAINRNGGVAYIHCTAGLGRAPAVAMAYMFWVQGYTLNEALELLLSKRSCFPKIDAIKSATADILSGFKNKPVTLSWENHQCSTVEVSGLDIGWGQRIPLKFDKERGAWILNKELPEGRYEYKYIIDGVWTCNENEPVTPPNKDGHVNNFIEVVEDEDPGSDRTILRARLTGDEPELTTEERSKIIQFLEDCPDEN 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7587491 7594309 - Cp4.1LG01g14460.1 Cpe01g01265 462578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01265 388 Gene3D Protein tyrosine phosphatase superfamily 98 380 IPR029021 -
Cpe01g01265 388 CDD E_set_AMPKbeta_like_N 264 345 - -
Cpe01g01265 388 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 1 387 IPR030079 GO:0005982|GO:0007623|GO:0019203
Cpe01g01265 388 CDD DSP_laforin-like 104 251 IPR045204 GO:0019203|GO:0046838
Cpe01g01265 388 Pfam Dual specificity phosphatase, catalytic domain 161 243 IPR000340 GO:0008138|GO:0016311
Cpe01g01265 388 ProSiteProfiles Dual specificity protein phosphatase domain profile. 105 262 IPR020422 GO:0006470|GO:0008138
Cpe01g01265 388 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 102 247 IPR029021 -
Cpe01g01265 388 Pfam Glycogen recognition site of AMP-activated protein kinase 264 348 IPR032640 -
Cpe01g01265 388 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 182 240 IPR000387 GO:0016311|GO:0016791
Cpe01g01265 388 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 387 - -
Cpe01g01265 388 SUPERFAMILY E set domains 263 345 IPR014756 -
Cpe01g01265 388 Gene3D Immunoglobulins 260 352 IPR013783 -
Cpe01g01265 388 SMART dsp_5 105 255 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00998 Cpe-Chr1:5917188 Cpe01g01265 Cpe-Chr1:7587491 2.40E-41 dispersed
Cpe01g01265 Cpe-Chr1:7587491 Cpe11g01148 Cpe-Chr11:9491701 3.48E-06 dispersed
Cpe04g00550 Cpe-Chr4:5925648 Cpe01g01265 Cpe-Chr1:7587491 2.10E-31 transposed
Cpe01g01265 Cpe-Chr1:7587491 Cpe09g00392 Cpe-Chr9:2415875 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01265 - - csv:101212390 693.73