Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01318 ATGAATCAGGAGCAAGATGTCATTCTTGAATGGCACCCTAAACGTGTCCTGATTGTGTTACGTTTTGTATACACCTCCATGGCCGATTTCCCATTGCTTGAATGGGTCGAGAATCGCCGGGAGACAACATGGGCTGCTTTCTATGCGGAGGCGAAGACTGTTGGGTTCTTAGCGGTTCCATTGGTTGCCATTAATCTTTCTCAGTTCTTGATACAGACTGGTTCTTTGATGGTTGTGGGTCATCTCGATCAACTCGCTCTCTCCAGCACTGCCATAGCCGTTTCTTTAGCTGCTGTTTCAGGGTTCAGTGTGCTTATAGGCATGGCTAGTGCTCTTGAAACTCTATGTGGGCAAGCTTATGGGGCAGGACAATATCAAAAATTTGGAAATCATGTTTACACTTCTATATTGTGTCTGCTATTTGTTTGCCTCCCTATAACTCTGTTATGGATCAACATTGGGAAGCTACTTGTTTTGGTTGGGCAGGATCCTTTGATATCACGTGAAGTTGGGAAGTTCATGATTTGGCTTATTCCTGGGCTCATTGCTTTTGCATTTCTGCACCCACTTATGAGATATTATCAGATGCAAGTTTTTGTGCTTCCCATGCTCATGTTTAGTTGGATCACCTTTTGTTTGCACATACCCCTCTGTTGGGTTTTGGTGTTTAAAACTGGACTCAAAAACCTTGGTGGAGCTTTAGCCATAAGTATTTCATATTGGTTGAATGTGATTCTTCTTGCTTTATATATGAAATTTTCCCCCAAGTGTGAAAAAACTCGTGGTGTTATTTCTATGGAGCTGTTCAAAGGAATTGGACTCTTCCTTCACTTTGCTATCCCTTCTGCAGTCATGACTTGCCTTAGTTGGTGGTCATTTGAGCTGATTATTTTGTTGTCTGGGCTTCTGCCAAATCCAGAGCTAGAGTCTTCAGTTCTATCTGTTTGCTTCAATACATTGACAACAATATTTACAGTACCATATGGAATTGGCAGTGCAGGCAGTACCAGAGTTTCAAATGAACTAGGAGCTGGGAGGCCGCAAGCTGCTCGTGTAGCTGCCTGGGCTGCAATATTTCTTGCAGTTGTGGCAATCATCATAGTGAGCGTGGTCCTGTTTGCTCTTCGTCATGTTTTCGGTTATGCTTTCAGCAACGAAAAAGAAGTCGTGGATTATGTTGCTGTCATGGCTCCCCTAGTTTGTATATCAATTGTTTTGGATGCCATTCAAGGGGTCCTCTCTGGCATTATAAGAGGATGTGGTTGGCAGCGTGTTGGGGCTTATATAAACTTAGGGGCTTTTTATCTCTGTGGAAATCCAGCTGCTTTAGCTCTTGGTTTCTTGGCAAATCTGAGAGGGAGGGGCCTGTGGATTGGCATCCAAAGCGGGGCTTTCGTGCAGATGCTTCTACTCGCAATCGTCCTGAGCCGTGTAAATTGGGAAAAACAGGCAGATGAAGCTAGGGAAAGGATCTTTGAAGGAAAAGGGTTGGTGAATAATGAGGAGCAAGTTAAGGTTGAGATATTTGAAGAGAAACTTGTTGCACTTCGGGCCATCGGAACACGATTCTCAACACTGCCGTCACTCAGAATCAACCAAGTGCGTCCCATTCTCAGAGGGATTCGCTCGCCGACTGTGATGGGGAAACCGGATAAAGAGCGCCTCATTCGAACTCTCAACTCGCATCTGAACACCATCCATGAAACTTTTCAGATGTTGGATCAAAATCCATCGTCTTCCCTTGAAAAGGTGAGCTGGGATGATGTTCTGAAAATGAGCGACCAAGTCTACAAGCAGGCGACTGTCGCTGGAATGGTGTGGACTGGAGGAAGACTAGAAGTTACAGAAATTGAGGAAAACATGGCATCTTACTTCAATATGCTGCAGGGTTTCCTCCTGGTTTCCCATGGGAGTAAAGTGGGTGCTGGCCCTACTTTATCTTCTGTTATCCATGCATCTGTGAAGCAAGTAATTGATTCAAGTTCTAAGTTATGGAAGGAATCCATCTCTTTATATGGACCTCGGGATAGTAAGGATCAAAACCAAGTAGTTCCGCAGTTGGTTGGTGCAGTTTGGGAAGCTTGCTCTGCTCTTAAGAAAGCTCCTTCCACAAATGTAACTGCAATTGGCCGAGCACTAATACAGGTTGGTGTATCAGTGAAGGACGTCCTCCGAGAAATGAAGGAGCTTAAACAAGGTCCCTCCGACTTGGACGACGCTCCCGAAGAATCATCTAACAAAGTTGACAGCAGTTTGCACTCGCAGGACGAGGGTAATACAAGCGATGATGCCGATATAGGTGACGATTTATCAGCCGAAGAGATGAGAGTTGCTCAATCTGCTATTAGCATCATATCTTCAATACTAAAAGTTATTAAGGAACTCATTCGCTCTATCACTAGTTTGCTTAAGCTGGAAAATGAAACCAACGAAAGTAAGTTAGCAACCTTGGAGAATCTATTGAGGCTATGCCAAGGAATTGGAGTGCAGGTGGACGAGCTTGGAGCTTGTCTTTACCCCCCACAAGAGGTCCCTGCCATTAAAGAAGCTTCTGAGAAAATTTCTAGCTTTCTTGACAATATGCAGGCAGAGTTGGGAAGTCTTAATGGTAATTCGGAAGGCTTTCTTCAGGCATGCAACAATCTCCGAAATTCATTGAAGCAGCTCGAGATCGAACTAGGTGGCTTCGCAGATTCTGATCTAGAAAGTAGAATGCAGAATGTAACGTTAAACGACTAA 2739 44.29 MNQEQDVILEWHPKRVLIVLRFVYTSMADFPLLEWVENRRETTWAAFYAEAKTVGFLAVPLVAINLSQFLIQTGSLMVVGHLDQLALSSTAIAVSLAAVSGFSVLIGMASALETLCGQAYGAGQYQKFGNHVYTSILCLLFVCLPITLLWINIGKLLVLVGQDPLISREVGKFMIWLIPGLIAFAFLHPLMRYYQMQVFVLPMLMFSWITFCLHIPLCWVLVFKTGLKNLGGALAISISYWLNVILLALYMKFSPKCEKTRGVISMELFKGIGLFLHFAIPSAVMTCLSWWSFELIILLSGLLPNPELESSVLSVCFNTLTTIFTVPYGIGSAGSTRVSNELGAGRPQAARVAAWAAIFLAVVAIIIVSVVLFALRHVFGYAFSNEKEVVDYVAVMAPLVCISIVLDAIQGVLSGIIRGCGWQRVGAYINLGAFYLCGNPAALALGFLANLRGRGLWIGIQSGAFVQMLLLAIVLSRVNWEKQADEARERIFEGKGLVNNEEQVKVEIFEEKLVALRAIGTRFSTLPSLRINQVRPILRGIRSPTVMGKPDKERLIRTLNSHLNTIHETFQMLDQNPSSSLEKVSWDDVLKMSDQVYKQATVAGMVWTGGRLEVTEIEENMASYFNMLQGFLLVSHGSKVGAGPTLSSVIHASVKQVIDSSSKLWKESISLYGPRDSKDQNQVVPQLVGAVWEACSALKKAPSTNVTAIGRALIQVGVSVKDVLREMKELKQGPSDLDDAPEESSNKVDSSLHSQDEGNTSDDADIGDDLSAEEMRVAQSAISIISSILKVIKELIRSITSLLKLENETNESKLATLENLLRLCQGIGVQVDELGACLYPPQEVPAIKEASEKISSFLDNMQAELGSLNGNSEGFLQACNNLRNSLKQLEIELGGFADSDLESRMQNVTLND 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7924723 7932393 + Cp4.1LG01g14080.1 Cpe01g01318 462631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01318 912 Pfam MatE 281 440 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe01g01318 912 Pfam MatE 60 220 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe01g01318 912 Gene3D I/LWEQ domain 701 893 - -
Cpe01g01318 912 PANTHER PROTEIN DETOXIFICATION 38 551 - -
Cpe01g01318 912 CDD MATE_eukaryotic 50 484 IPR045069 GO:0042910|GO:1990961
Cpe01g01318 912 Coils Coil 872 892 - -
Cpe01g01318 912 MobiDBLite consensus disorder prediction 731 767 - -
Cpe01g01318 912 TIGRFAM matE: MATE efflux family protein 60 457 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe01g01318 912 Pfam Grap2 and cyclin-D-interacting 588 862 - -
Cpe01g01318 912 PANTHER MULTIDRUG RESISTANCE PROTEIN 38 551 - -
Cpe01g01318 912 MobiDBLite consensus disorder prediction 731 760 - -
Cpe01g01318 912 Gene3D Talin, central domain 546 698 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01318 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101208050 771.155
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01318 Cpe09g00330 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01318 Cpe-Chr1:7924723 Cpe09g00331 Cpe-Chr9:2004835 0 dispersed
Cpe01g01317 Cpe-Chr1:7920100 Cpe01g01318 Cpe-Chr1:7924723 0 tandem
Cpe01g01318 Cpe-Chr1:7924723 Cpe09g00330 Cpe-Chr9:2000454 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g384 . . . . . . . . Cmo04g01548 . . Cma18g00987 Car04g01534 Car18g00908 Sed07g2128 Cpe09g00330 Cpe01g01318 Bhi07g01256 Tan04g0793 Cmetu10g0036 Lac13g0546 Hepe01g1151 . . . . . . . . . Cone13ag0790 . . . Lsi04g00209 Csa05g02658 Chy10g01190 Cme10g00214 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001043 2 6 4 2 3 1 0 1 1 2 0 1 2 3 3 2 1 3 3 1 3 1 4 6 6 3 3 7 5 3 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01318 Cpe_Chr01 FPKM 26.853481 27.165976 33.974651 36.620323 15.054388 15.281493 15.240383 46.819023 47.145561 43.09473