Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01321 ATGAAGGACCGTACTCCTTCCTCCAATGGCGCCGTTTACGTCCCTCCTCACCTCCGTCTCCGTTCCGTCGTTACTCGTTCTGATCGTTCCTCTGCTGTTTCCGCTGTTGACTGCAAGCTTAGGGAGGCTCCTGCCTCGCTGCTCGATTCCGGAACCATTCCTCCGCCTTGCCTTGATTCTCGATCTCAAGAACTCCTCTCGATGGGGAAATCGCGTTTTAATTCCGTGCACTATGATTTTGCCTGCGACGATGGCGCTCCTGTGGATAGCTGGGGTTTTTCACCTCCTGCTAACATTGATTTGTGGAAAAGGAAGTTAGCACAACTTTTACGTGACAAGGAGAAGCAAGAGTTAGTTTCAAGGGAGAAAAAAGATAGACATGATTTTGAGCAAATAGCTGCTTTGGCAAGTAGAATGGGACTTTTTAGCCATCTATATGCCAAAGTTGCTGTTTTTAGTAAGGTCCCGTTGCCGAACTACAGATTTGATTTGGATGATCGGCGTCCACAGAGGGAGGTTTCTTTGCCTCCTGGGTTGCTTAGAAGAGTTGATGAACATCTGGGAGAATTTCTCTCTCAAAAGTCTCGGTTTAAATGTTTTCTAGATAACTCCGTCTCTAGATCAAGCAGCAGTGGTAGCATTGCTACAGATGAAGGACTTTTTGAGCAACCTGAGCTACAAGCATCTAGTAAGGCTGTGATGGAAAAAATTCTTTGGCGGAGAAGTTTGCATCTGCGTGATCAACAGCATGCTTGGCAGTCATCTCTAGAAGGAAGAGAAATGCTGGAATTCCGGAAAAAACTCCCTGCTTACAAGGAGAAGGATGCATTATTGACCACAATCTCACAGAATCAGGTTATTATTATTTCAGGTGAAACTGGTTGTGGCAAGACTACGCAAGTTCCCCAATTCATTTTGGAATCAGAAATAGAATCACTCCGTGGTGCTGTTTGCAGCATCATATGTACACAGCCAAGACGAATATCTGCTATGTCCGTCTCTGAGAGAGTTGCTTCTGAAAGAGGCGAGAAGTTGGGTGAATCTGTTGGTTATAAAGTGCGGCTGGAGGGTATGAAAGGGAGGGATACTCATCTTCTCTTTTGCACCACCGGCATCTTGTTGAGAAGACTGCTGGTTGATAGAAATTTGAAAGGCGTAACTCATGTTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGATTTTCTGCTTATTGTCCTGAAAGATCTCCTTCCTCGTCGACCAGAATTGAGGTTGATTCTAATGAGCGCAACTTTAGATGCAGAACTTTTCTCATCCTACTTTGGTGGGGCTCAAATAATTTACATTCCGGGATTCACACACCCTGTCAAAACTCATTTTCTGGAGGATATTCTAGAAATGACGGGTTACAGATTAACTCCATACAATCAAATAGATGATTATGGTCCAGAGAAGACTTGGAAAATGAGCAAACAAGCACCAAGAAAGAGGAAAACCCAGATTGCCTCTACTGTTCAGGATGCACTTATGGCAGCTGATTTTAACGAGTACAGTCTTCAAACTCAGGAGTCTTTATCGTGTTGGAATCCAGACTGTCTTGGATTTAATCTCATAGAATTTCTTCTAGTCAGTATATGTGAGAGTGAAATGCCTGGAGGTATTCTTGTTTTTATGACTGGGTGGGATGACATCAGTTCTCTGAAGGAGAAACTTCAGTCTCACCCTTTATTAGGAGATCCAACTCGGGTCATGTTGTTGGCATGCCATGGCTCTATGGCCAGTTCAGAGCAGAGGTTAATATTTACTGAACCTGACAAAGGAGTGAGGAAGGTAGTGCTTGCAACAAATATTGCTGAGACAAGTATCACGATAAATGATGTTGTGTTTGTTCTGGATTGTGGAAAGGCAAAAGAAACATCGTATGATGCTTTAAACAACACTCCTTGTTTGCTTCCCTCTTGGATATCCAAGGTTTCTGCTCAACAAAGAAGAGGAAGGGCTGGTCGTGTTCAACCTGGAGAATGTTATCATCTATACCCTAGGTCTGTGTTTGATTCTTTTTTCGAGTATCAGCTACCCGAAATTTTGAGAACACCTTTACAGTCCCTCTGCTTGCAAATAAAAAGCCTAAAGCTTGGAAGTATATCAGAGTTTCTATCTAGGGCTTTGCAATCGCCAGAGCTACTAGCGGTTGGTCTTGTTCCTTCCTATTTCAATCTGGATACAGTTCAGAATGCTATTGAATATTTAAAGATCATTGGAGCATTTGATGAGAGTGAAAATCTTACTGTCTTAGGTCGTTATTTGACTATGCTCCCAATGGAACCAAAATTGGGAAAGATGTTGATAATAGGTTCTATCTTCAATTGTTTGGATCCAATTTTGTCCATTGTTGCTGGCTTCAGTGTGAGAGACCCTTTTCTAACACCACTTGAGAAGAAGGATGCTGCAGAGGCTGCGAAGTCCCAATTTTCACGAGATCATAGTGATCACCTTGCCATTATCCGGGCTTATGAGGGATGGAAAGAAGCTGAGAGGAACTTTGGTGGTTACGACTTCTGTTGGAAGAACTTCCTTTCTGTACAATCGATGAAGGCTATTGATTCATTAAGGAAGGAGTTTTTCTCTTTGCTTAGAGATACTGGTTTAGTTGATGAGCACTCGAACACGTACAATGCTTGGAGTCTAGATGAACGACTCATACGTGCAGTTATTTGCTGTGGCCTCTATCCTGGAGTTTGCTCCATTGTGATGCAGCATAATGAGAAGTCATTTTCTCTCAAAACTATGGAGGATGGCCAGGTACTTCTCTATTCGAACTCAGTCAATGCTCGAGAGTCGAGGATTCCATATCCATGGATAGTTTTCAACGAGAAGATAAAAGTGAACTCCATTTTCCTTCGAGATTCAACAGCTATCTCTGACTCAATGCTGCTTCTCTTTGGTGGAAGCATCTCAAAAGGTGATCAAGAGGGACACTTGAAAATGTTGGGCGGTTTTTTGGAATTTTTTATGAAACCTGATGTAGCAGAGACATATCAGAAATTAAGAATGGAACTTGAAGAGCTTATACAGATGAAGCTACTAAATCCTACGATGGACTTGCACTCCCACCATGAGCTCCTATCTGCTATACGCTTGCTTATTTCAGAAGACCAGTGTGAAGGTCGATTTACTTTTGGCCGGCAGATCCTTCAGCAACCCTCCAAGAAATCAACTCTGGCAGCGGCACCAAATTCTGTTTCAAGAATTGAAAGTGGACCTGGTGGTGACAATTCTAAGAGTCAGCTGCAGACTTTACTCACGAGGGCCGGATATGCTGCACCCATCTATAAGACAAAGCAATTGAAGAATAATCATTTCCAAGCAACCGTTGAATTTAATGGACTGCAAATTATGGGACAACCTTGTACCAACAAAAAGAATGCAGAAAAGGATGCAGCAGCTAAGGCTCTCGAGTGGTTAATGGGTGGAAATCAGATTGGGCACGACTATATCAACCAAATGTCTATGATGCTAAAAAGAAGCAAGAAGGATCATAACTAA 3531 42.59 MKDRTPSSNGAVYVPPHLRLRSVVTRSDRSSAVSAVDCKLREAPASLLDSGTIPPPCLDSRSQELLSMGKSRFNSVHYDFACDDGAPVDSWGFSPPANIDLWKRKLAQLLRDKEKQELVSREKKDRHDFEQIAALASRMGLFSHLYAKVAVFSKVPLPNYRFDLDDRRPQREVSLPPGLLRRVDEHLGEFLSQKSRFKCFLDNSVSRSSSSGSIATDEGLFEQPELQASSKAVMEKILWRRSLHLRDQQHAWQSSLEGREMLEFRKKLPAYKEKDALLTTISQNQVIIISGETGCGKTTQVPQFILESEIESLRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAQIIYIPGFTHPVKTHFLEDILEMTGYRLTPYNQIDDYGPEKTWKMSKQAPRKRKTQIASTVQDALMAADFNEYSLQTQESLSCWNPDCLGFNLIEFLLVSICESEMPGGILVFMTGWDDISSLKEKLQSHPLLGDPTRVMLLACHGSMASSEQRLIFTEPDKGVRKVVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRSVFDSFFEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVGLVPSYFNLDTVQNAIEYLKIIGAFDESENLTVLGRYLTMLPMEPKLGKMLIIGSIFNCLDPILSIVAGFSVRDPFLTPLEKKDAAEAAKSQFSRDHSDHLAIIRAYEGWKEAERNFGGYDFCWKNFLSVQSMKAIDSLRKEFFSLLRDTGLVDEHSNTYNAWSLDERLIRAVICCGLYPGVCSIVMQHNEKSFSLKTMEDGQVLLYSNSVNARESRIPYPWIVFNEKIKVNSIFLRDSTAISDSMLLLFGGSISKGDQEGHLKMLGGFLEFFMKPDVAETYQKLRMELEELIQMKLLNPTMDLHSHHELLSAIRLLISEDQCEGRFTFGRQILQQPSKKSTLAAAPNSVSRIESGPGGDNSKSQLQTLLTRAGYAAPIYKTKQLKNNHFQATVEFNGLQIMGQPCTNKKNAEKDAAAKALEWLMGGNQIGHDYINQMSMMLKRSKKDHN 1176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7948447 7960341 - Cp4.1LG01g13830.1 Cpe01g01321 462634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01321 1176 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 896 980 IPR011709 -
Cpe01g01321 1176 Pfam Double-stranded RNA binding motif 1088 1150 IPR014720 -
Cpe01g01321 1176 Pfam DEAD/DEAH box helicase 278 428 IPR011545 GO:0003676|GO:0005524
Cpe01g01321 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 838 IPR027417 -
Cpe01g01321 1176 Pfam Helicase conserved C-terminal domain 536 665 IPR001650 -
Cpe01g01321 1176 SMART ultradead3 266 454 IPR014001 -
Cpe01g01321 1176 Gene3D - 733 830 - -
Cpe01g01321 1176 SMART helicmild6 560 666 IPR001650 -
Cpe01g01321 1176 Gene3D - 1065 1154 - -
Cpe01g01321 1176 SMART ha2_5 740 830 IPR007502 GO:0004386
Cpe01g01321 1176 Coils Coil 99 119 - -
Cpe01g01321 1176 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 86 1100 - -
Cpe01g01321 1176 SMART DRBM_3 1088 1151 IPR014720 -
Cpe01g01321 1176 Gene3D - 214 446 IPR027417 -
Cpe01g01321 1176 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 532 706 IPR001650 -
Cpe01g01321 1176 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 278 445 IPR014001 -
Cpe01g01321 1176 MobiDBLite consensus disorder prediction 1066 1089 - -
Cpe01g01321 1176 Gene3D - 533 685 IPR027417 -
Cpe01g01321 1176 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1087 1152 IPR014720 -
Cpe01g01321 1176 CDD DEXHc_RHA-like 284 444 - -
Cpe01g01321 1176 PANTHER ATP-DEPENDENT RNA HELICASE 86 1100 - -
Cpe01g01321 1176 Pfam Helicase associated domain (HA2) 741 818 IPR007502 GO:0004386
Cpe01g01321 1176 SUPERFAMILY dsRNA-binding domain-like 1083 1165 - -
Cpe01g01321 1176 CDD SF2_C_RHA 449 674 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01321 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101208774 2042.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01321 Cpe09g00328 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01321 Cpe-Chr1:7948447 Cpe17g00735 Cpe-Chr17:5833762 5.53E-105 dispersed
Cpe02g01496 Cpe-Chr2:12846701 Cpe01g01321 Cpe-Chr1:7948447 1.53E-50 transposed
Cpe03g00314 Cpe-Chr3:1624216 Cpe01g01321 Cpe-Chr1:7948447 0 transposed
Cpe14g00330 Cpe-Chr14:1976922 Cpe01g01321 Cpe-Chr1:7948447 1.38E-161 transposed
Cpe01g01321 Cpe-Chr1:7948447 Cpe18g00690 Cpe-Chr18:6881291 0 wgd
Cpe01g01321 Cpe-Chr1:7948447 Cpe09g00328 Cpe-Chr9:1974411 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01321 Cpe_Chr01 FPKM 2.385621 1.940539 1.188176 1.219957 0.556616 0.845018 0.40926 0.800092 0.452037 0.357193