Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01333 ATGGCGGCGTCTACTCGGCTGTCGCATTTGGCTCTCTATATTTGCTTACTCCACTTTACATGTCTTTATGCCTCTTCGAATGTAGATTTAGACGCATTAATGGCGTTCAAAGCGGCGTCTGATAAAGGGAATAAGCTCACCACATGGAACTCTACCTCTAATCCATGTGCTTGGGATGGAGTTTCTTGCCTTAGAAATAGGGTCTCGAGGTTGGTTCTTGAGAATCTTGATCTTACAGGCTCTATGGCTCCTCTTACGGCTTTGACTCAGTTACGAGTGCTGAGCCTTAAGCGGAACCGTCTCTCTGGTCCCATTCCCGACCTCTCCAACTTCACTGCTCTCAAACTCGTGTTTCTATCGTACAATGAATTTTCCGGTGACTTCCCGGCTTCTTTTCGGTCTCTCGTCCGGCTCTACCGTCTCGATCTTTCTCACAATAACCTAACTGGAGAGATACCGGCTTCTGTTAACCGTATGGCTCATCTTCTCACTCTCCGGGTCGAAGATAACCGGTTTTCAGGTTCTATTTTGGAACTGAACCTGCCGAATCTTCAGGACTTCAATGTTTCAGCGAACAGTTTCTCCGGCGAAATCCCCAAATCGTTGTCGACGTTTCCTGAGTCTTCTTTCGGCCAGAACTTGGGTTTGTGTGGTTCCCCGCTCCAGAGCTGTACGAGCATTGTCAGTAATCCGACGGAACCCGGATCCGAAGGGGCAATTGCCTCGCCCATTACACGGCCGCGGAACCTCACTGTTTCATCTTCTCCGACTTCCCTTCCCGGAGTTTCACCTGAAACAAAGCCGGAAAATACACACCACCACAGCACTGGAAAGATAGATTTGCTTCGAGCCTCCGCGGAAATGCTCGGTAAGGGTGGGTTCGGAACTTCGTACAAGGCGATTCTCGACGACGGCAATGTGGTGGCGGTGAAACGGCTGAAAGATGCTCATGTTGGAGGAAAACGAGAGTTCGAGCAGCACATGGAGGTATTGGGAAGGTTGAGACATGCTAATATTGTAAGCTTGAGAGCTTACTATTTCGCAAGAGAGGAGAAGTTATTGGTATATGATTACATGCCCAATGGCAGCTTCTTCTGGCTTCTTCACGGGAACAGAGGTCCTGGACGGACGCCGTTGGACTGGACGACGAGGTTGAAGATTGCCGCCGGAGCGGCTAGAGGACTGTCCTTCATTCACAACTCCTGCAAGTCCCTCAGGCTCGCCCATGGCAATGTTAAATCCACCAACATCCTTTTGGACCAATCTGGAAATGCTCGCGTCTCTGATTTCGGATTGGCCCTTTTCACTCCCCCTTCCACTCCTCGATCCAACGGTTACCGGGCGCCGGAGTGCGGTGAGGGTAGAAAACTAACTCAGAAGGCGGATGTGTACTCGTTTGGGGTTCTTCTCCTCGAGCTGCTTACTGGAAAGTGCCCTTCCGTCATGGAGAACGGCGGTGGATACGGCGGCGTGTTGGATTTGCCCCGGTGGGTTCAGTCGGTGGTGCGAGAGGAGTGGACGGCTGAAGTGTTTGATTTGGAGCTGATGAGATACAAAGACATCGAAGAGGAAATGGTGGGGCTTCTGCAGATCGCCTTGGCCTGTACATCGGCTTCGCCGGATCAACGGCCGAAGATGAGCCATGTGGTGAAGATGATTGAGGAGCTCCGAGGGATGGAGGTGTCGCCGTTCCATGACGGAACTGACTCAGTTACAGAGTCGCCGTCAGTTTCGGAGGGGACTTGCGGCGGAGGAGCCAGCCAGTAA 1767 51.84 MAASTRLSHLALYICLLHFTCLYASSNVDLDALMAFKAASDKGNKLTTWNSTSNPCAWDGVSCLRNRVSRLVLENLDLTGSMAPLTALTQLRVLSLKRNRLSGPIPDLSNFTALKLVFLSYNEFSGDFPASFRSLVRLYRLDLSHNNLTGEIPASVNRMAHLLTLRVEDNRFSGSILELNLPNLQDFNVSANSFSGEIPKSLSTFPESSFGQNLGLCGSPLQSCTSIVSNPTEPGSEGAIASPITRPRNLTVSSSPTSLPGVSPETKPENTHHHSTGKIDLLRASAEMLGKGGFGTSYKAILDDGNVVAVKRLKDAHVGGKREFEQHMEVLGRLRHANIVSLRAYYFAREEKLLVYDYMPNGSFFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLSFIHNSCKSLRLAHGNVKSTNILLDQSGNARVSDFGLALFTPPSTPRSNGYRAPECGEGRKLTQKADVYSFGVLLLELLTGKCPSVMENGGGYGGVLDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIALACTSASPDQRPKMSHVVKMIEELRGMEVSPFHDGTDSVTESPSVSEGTCGGGASQ 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8022491 8025247 + Cp4.1LG01g13900.1 Cpe01g01333 462646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01333 588 SUPERFAMILY Protein kinase-like (PK-like) 287 553 IPR011009 -
Cpe01g01333 588 Gene3D Ribonuclease Inhibitor 22 85 IPR032675 -
Cpe01g01333 588 Gene3D Ribonuclease Inhibitor 86 230 IPR032675 -
Cpe01g01333 588 Gene3D Transferase(Phosphotransferase) domain 1 359 570 - -
Cpe01g01333 588 PANTHER - 24 230 - -
Cpe01g01333 588 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 230 - -
Cpe01g01333 588 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 280 571 - -
Cpe01g01333 588 MobiDBLite consensus disorder prediction 562 588 - -
Cpe01g01333 588 Pfam Protein kinase domain 287 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g01333 588 MobiDBLite consensus disorder prediction 567 588 - -
Cpe01g01333 588 MobiDBLite consensus disorder prediction 246 265 - -
Cpe01g01333 588 PANTHER - 280 571 - -
Cpe01g01333 588 MobiDBLite consensus disorder prediction 232 276 - -
Cpe01g01333 588 SUPERFAMILY L domain-like 44 205 - -
Cpe01g01333 588 ProSiteProfiles Protein kinase domain profile. 283 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g01333 588 CDD STKc_IRAK 289 556 - -
Cpe01g01333 588 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Cpe01g01333 588 Gene3D Phosphorylase Kinase; domain 1 284 358 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01333 Cpe09g00316 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01333 Cpe-Chr1:8022491 Cpe11g01095 Cpe-Chr11:9123791 1.88E-163 dispersed
Cpe18g00665 Cpe-Chr18:6710715 Cpe01g01333 Cpe-Chr1:8022491 2.40E-111 dispersed
Cpe01g01333 Cpe-Chr1:8022491 Cpe09g00316 Cpe-Chr9:1877589 5.06E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62147 PF00069 Pkinase 1.90E-34 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01333 - - csv:101217010 766.533