Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01334 ATGTTGGTTACGCTTACGGCCATTCATAACAGCCACGCTGGTGGAGCCGTCGCCGCTATGGCTGATGCTTCTCCGGTGAATTCCTCAATGGAATCATGTTCCAGAATTGTCGCTGCGGAATCTCCGATTCTCATATTTGTCTTCTTTCACAAGGCTATACGTGCTGAGCTTGATCACTTCCATCGCGACGCTATTGAATTCGCTACCAACCAGCAAAGTGGTGGCGATATTGGACCGTTGTTGCAGCGCTATCACTTCCTTCGAGCTGTTTATAAGCATCACTGTAACGCCGAGGACGAGGTCATCTTCCCGGCTTTAGATCTGCGAGTGAAAAATGTGGCAAGTACTTATTTCCTTGAACATGAAGGGGAGAGTGTTCTGTTTTGTCAATTGCTGGAGCTTCTGAATTCTAATGCGTTGGAGGAAGGGAGCTATAAGAGGGAGCTGTCATCTTGTGTCAGGGCTCTTCAGATATCAATATGCCAGCATATGTTCAAGGAAGAGGAACAGGTGTTCCCGTTACTTACAGAGAAGTTTTCTTTTGAAGAACAGGCATCATTAGTATGGAAATTTCTTTGTAGTATACCTATTCATATGCTGGAAGTCTTTCTTCCCTGGCTTTCTTCCTCTATTTCTCCGGATGAGCTTCAGATTATGTGCAAATGCTTGAGCAAAATTATCCCAGAGCAAAAGCTTCTTCAGAAGATAATATTTTCCTGGATGGAGGATGCAAGAACGACTCGTGCCAATCAAAGTTTGTACGACGAAAATTTAGACTTTCAATGTCTGGGTTCTCAGGTTCATGATCTTATATGTAGACCAGAGAAGGGGAATGACATTTCTGAATCAGCTAGAATTGGTAAAAGGAAATACATGGAGCAAAGTAATTTTACCTATTCTACTGTTTCAATTGCTTGCCCCATCAATGAAATATTATATTGGCATAATGCTATAAGAAAAGAACTAAATAGCATAGCTGAGGCAGCTAGGGACCTACCATTGTCTTCTGATTTTTCTGAGTTGTCTGCACTAAAGGAGAGGCTGCAGTTTATTGCAGAAGTCTGCATCTTCCACTGCATTGCTGAGGATAAAGTTATATTTCCTGCTGTAGATGCTGAATTATCTTTTGCTGATAAGCATGCAGAAGAAGAAATTCAATTTGATAAGCTTAGGCACTTGATAGAGAGTATCCAAGCTGATAGAGCTAAATATTCTTCTGCTGAAATTCATAAAAAGTTAAGTTCTCATGCTGATCAAATTATCAAGACCATCCAGAAGCACTTCCATGATGAGGAGTTGCATGTTCTTCCACTTGCTCGGAAGCATTTTGGACCCCAGAGGCAGCGAGAACTTCTGTATCACAGCTTATGCATAATGCCCTTGAAATGGATAGAGCGTGTCTTACCTTGGTTGGTAGAAACACTTACTGAAGAAGAAGCAAGATCCTTTCTTCAGAATATGCAAATGGCAGCTCCAAAGTCGGATCATGCGCTTGTTACACTATTTTCTGGTTGGGCATGCAAAGGTCATCCCAGGAGCCTTTGTTTTTCTGGAAGTGATCTTAGCCATTGTGCTGAACGGATATCGACTGGAAATGAAGAATCATGCTCCTCCTTTTCTTCTGCCAGTGAAAAACCTTCTTGCATTCAGGCAACTGAGTGTGCCAGGCCATCCAAATGTGAGAAGGAAGTATGCCATGGAGACTTAAATGGCCGTCTTCCTTTGAAAAGCCCAAGCAAAAAACGTCAGTTCACTCGCTCGAAAAAATCTGCTTGTGTCCCTGGGTTAGGAGTGGATGACAATAATTTAGGAATGAGATCTCTGGCAGCAGCAAAATCATTGCGTTCTTTGTGTTTTGGTCCCTATGCTCCTTCTCTCAACTCCAGTCTTTTTAGTCTGGAGAATGATCCAATCTCCTGTGGCAGTGGTTCTAAGTCACGACCTATTGATAACATATTTAAATTTCATAAAGCAATAAGCAAAGACTTGGAGTTTTTGGATAATGAATCTGTGAATCTCGGTGACTGCAATGATACATTCTTTAGGAAATTTTGCGGTAGGTTTCATCTGTTGTGGGGTTTATATAAAGCTCATAGTAATGCAGAGGACGATATAGTATTTCCTGCATTAGAATCAAAAGAAACTCTTCATAATGTGAGTCACTCTTATACATTAGACCACAAACAGGAGGAAGAGCTATTTGAAGGTATTTCTACTGCACTTTCCAAGCTTACAAACGTTCGCAGAGACTTGAATGGTAAGAAAAACTGTAACGATTCAAATTGGATCATGCCTCATACCTCTGATATCAATGATACTATGAGAATGAATATTGAGCTGGCAACAAAGCTCCAGGGCATGTGTAGATCAATTAGAGTGACACTTGACCAACATATTTTCCGTGAGGAATCGGAGTTGTTACCGTTGTTCCATACATATTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTAGAATAATTGGTACTACAGGTGCTGAGGTCCTTCAATCAATGTTGCCTTGGGTAACTTCTGCACTTACTCAGGAGGAGCAGAATAAGATGATGGATACATTGAAGCAGGCAACCAGAAATACAATGTTTAGTGACTGGCTAAATGAATGGTGGGAAGGCCCTGCTACATCTCCACATTATATGGAATCTGTCAGTCATGTATCTGGAGGTTCTGATTCCCATGGCAACTGTGACCATAAAAATGATTCGGTTTTCAAGCCTGGATGGAAAGAGATTTTTAGGATGAATGAAAATGAACTTGAATCAGAAATAAGAAACGTTGCCCGGGATTCAACCATTGACCCTAGGAGAAAAGATTATCTGATTCAGAACTTGATCACCAGTCGCTGGATAGCTTCTCAGCAGATGCTACCCCAAGCAACTGCAGGTGAAAACTCAGATGCAAAAGAACTGATTGCATGTGCTCCATCATTTCGTGATCCCGAGAAACAGATTTTCGGGTGTGAGCATTATAAAAGAAACTGTAAGCTTCTTGCAACTTGTTGTGGCAAGTTGTTCACTTGTAGTTTCTGTCATGATAAAGTCAGTGATCATTCGATGGACAGGAAGGCTTCAACTGAAATGATGTGTATGCGCTGCCTCAAAGTTCAGCCTACTGCATCTGTTTGCTCAACACCAGCCTGTGGTGGTCTCTCTATGGCAAAGTTCTACTGTAGTATTTGCAAACTTTTTGACGATGAAAGGGAAGTCTATCATTGTCCCTTCTGCAATTTATGTCGTCTTGGGAAGGGACTCGGTACTGATTTTTTTCATTGTATGACGTGCAACTGTTGTTTGGCAATGAAATTAGTTGATCACAAGTGCCATGAGAGGGGCCTAGAAACAAACTGCCCTATTTGCTGTGATTTTTTGTTCACGTCTAGTGAAAGTGTTAGAGCTCTCCCTTGTGGCCATTTCATGCATTCAGCTTGTTTCCAGGCTTACACTTGTAGCCACTACATATGTCCAATATGTAGCAAGTCCTTGGGAGATATGACGGTATACTTCGGCATGCTTGACGCATTACTGGCATTGGAGGTACTCCCTGAAGAATACATGGAACGCTGTCAGGACATATTGTGCAATGACTGCTCCAAGAAGGGGAAAGCGCGCTTCCACTGGCTGTACCATAAATGTGGGAATTGTGGATCTTACAATACCAAGGTGATTAAGGTTAGTTCAAGCTCCGCACAGCAATGA 3711 41.79 MLVTLTAIHNSHAGGAVAAMADASPVNSSMESCSRIVAAESPILIFVFFHKAIRAELDHFHRDAIEFATNQQSGGDIGPLLQRYHFLRAVYKHHCNAEDEVIFPALDLRVKNVASTYFLEHEGESVLFCQLLELLNSNALEEGSYKRELSSCVRALQISICQHMFKEEEQVFPLLTEKFSFEEQASLVWKFLCSIPIHMLEVFLPWLSSSISPDELQIMCKCLSKIIPEQKLLQKIIFSWMEDARTTRANQSLYDENLDFQCLGSQVHDLICRPEKGNDISESARIGKRKYMEQSNFTYSTVSIACPINEILYWHNAIRKELNSIAEAARDLPLSSDFSELSALKERLQFIAEVCIFHCIAEDKVIFPAVDAELSFADKHAEEEIQFDKLRHLIESIQADRAKYSSAEIHKKLSSHADQIIKTIQKHFHDEELHVLPLARKHFGPQRQRELLYHSLCIMPLKWIERVLPWLVETLTEEEARSFLQNMQMAAPKSDHALVTLFSGWACKGHPRSLCFSGSDLSHCAERISTGNEESCSSFSSASEKPSCIQATECARPSKCEKEVCHGDLNGRLPLKSPSKKRQFTRSKKSACVPGLGVDDNNLGMRSLAAAKSLRSLCFGPYAPSLNSSLFSLENDPISCGSGSKSRPIDNIFKFHKAISKDLEFLDNESVNLGDCNDTFFRKFCGRFHLLWGLYKAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEELFEGISTALSKLTNVRRDLNGKKNCNDSNWIMPHTSDINDTMRMNIELATKLQGMCRSIRVTLDQHIFREESELLPLFHTYFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNKMMDTLKQATRNTMFSDWLNEWWEGPATSPHYMESVSHVSGGSDSHGNCDHKNDSVFKPGWKEIFRMNENELESEIRNVARDSTIDPRRKDYLIQNLITSRWIASQQMLPQATAGENSDAKELIACAPSFRDPEKQIFGCEHYKRNCKLLATCCGKLFTCSFCHDKVSDHSMDRKASTEMMCMRCLKVQPTASVCSTPACGGLSMAKFYCSICKLFDDEREVYHCPFCNLCRLGKGLGTDFFHCMTCNCCLAMKLVDHKCHERGLETNCPICCDFLFTSSESVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMTVYFGMLDALLALEVLPEEYMERCQDILCNDCSKKGKARFHWLYHKCGNCGSYNTKVIKVSSSSAQQ 1236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8026755 8034839 + Cp4.1LG01g13880.1 Cpe01g01334 462647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01334 1236 CDD RING-H2_Pirh2 1120 1163 - -
Cpe01g01334 1236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1116 1165 IPR013083 -
Cpe01g01334 1236 CDD Hr-like 310 437 - -
Cpe01g01334 1236 Pfam CHY zinc finger 992 1067 IPR008913 GO:0008270
Cpe01g01334 1236 Pfam Zinc-ribbon 1168 1224 IPR039512 -
Cpe01g01334 1236 Gene3D nmb1532 protein domain like 643 869 - -
Cpe01g01334 1236 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 32 1233 - -
Cpe01g01334 1236 SUPERFAMILY Zinc hairpin stack 1058 1113 IPR037275 -
Cpe01g01334 1236 CDD Hr-like 45 173 - -
Cpe01g01334 1236 CDD Hr-like 652 808 - -
Cpe01g01334 1236 ProSiteProfiles Zinc finger CTCHY-type profile. 1057 1120 IPR017921 -
Cpe01g01334 1236 Pfam Ring finger domain 1120 1162 IPR001841 -
Cpe01g01334 1236 Pfam Hemerythrin HHE cation binding domain 648 809 IPR012312 -
Cpe01g01334 1236 Pfam Hemerythrin HHE cation binding domain 310 439 IPR012312 -
Cpe01g01334 1236 Pfam Hemerythrin HHE cation binding domain 48 175 IPR012312 -
Cpe01g01334 1236 Gene3D nmb1532 protein domain like 40 193 - -
Cpe01g01334 1236 Gene3D nmb1532 protein domain like 310 454 - -
Cpe01g01334 1236 SUPERFAMILY RING/U-box 1120 1167 - -
Cpe01g01334 1236 SMART ring_2 1121 1162 IPR001841 -
Cpe01g01334 1236 ProSiteProfiles Zinc finger CHY-type profile. 985 1054 IPR008913 GO:0008270
Cpe01g01334 1236 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1-LIKE 32 1233 - -
Cpe01g01334 1236 SUPERFAMILY CHY zinc finger-like 984 1048 IPR037274 GO:0008270
Cpe01g01334 1236 ProSiteProfiles Zinc finger RING-type profile. 1121 1163 IPR001841 -
Cpe01g01334 1236 Gene3D - 1192 1236 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01334 Cpe04g01394 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01334 Cpe-Chr1:8026755 Cpe18g00810 Cpe-Chr18:7551304 3.25E-07 dispersed
Cpe01g01334 Cpe-Chr1:8026755 Cpe18g00697 Cpe-Chr18:6931390 0 wgd
Cpe01g01334 Cpe-Chr1:8026755 Cpe04g01394 Cpe-Chr4:11273317 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01334 K16276 - csv:101217252 2144.39