Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01350 ATGAATGGAGAGAGAATTGAGGGAAATTTCAGGGGGGATGAACTACTAAAGGGAAAACACGGTCCAGGGTCTCATACTAGTCTCTGCCGCGTCGGGAGTGGCTTCACTAGTGTCGTTCTCGACTCTGACTCATGCGGCGTGGAGGCAGAGTCACGCAAATTGCCCTCCTCCCGTTTCAAAGGAGTGGTCCCACAGCCCAACGGCCGCTGGGGCGCACAGATTTACGAGAAGCATCAAAGAGTATGGTTGGGGACTTTCAACGAAGAGGAAGAAGCAGCACGTGCATACGATGTCGCTGCCCAACGCTTCCGCGGCCGTGACGCTGTCACCAATTTTAAAGATGAAGACAACGACGACGACGTATCGGCCTTCCTCAACTCCCATTCCAAAGCAGAGATCGTGGACATGCTACGTAAGCACACTTACCTACACGAGCTCCATCAAAGCAAACGAAACGCCGGGTTATCCGGTTTAGATCGCAAACATAACCGTTCCTTATCCGGGTTGGATTCGGAGGCTCGCGAACTTCTATTCGAAAAAGCCGTAACCCCAAGCGATGTAGGAAAATTGAACCGTCTCGTTATCCCTAAACAACACGCCGAGAAAAACTTCCCTCTCCAAACCGGTTCGACCGCTTCCTCAAAAGGTCTGTTGTTGAACTTCGAGGACGGAGGAGGCAAAGTGTGGCGGTTCCGTTACTCGTATTGGAATAGTAGCCAAAGCTACGTGCTAACCAAAGGGTGGAGCCGGTTCGTGAAAGAAAAGAATCTGAAACCCGGTGACATTGTGAGCTTCCTCAAATCTCCCGGACAGGACAAACAGCTGTACATCGAATGGAAGTCCAGAAAGGCGTCGCCCACAACCGACCCCAACATCAACCCGGTTCACATCGTCCGACTCTTCGGAGTTGACATCGTCAAAGCTTCTTCGCCAAACACTGGGTGCGGCGAGAAGAGGAGAGAATTGGAATTTCTCGCTTTTCAATGTACCAAAAAACAAAGGATAGTCGGAGCATTGTAA 1020 50.98 MNGERIEGNFRGDELLKGKHGPGSHTSLCRVGSGFTSVVLDSDSCGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDVAAQRFRGRDAVTNFKDEDNDDDVSAFLNSHSKAEIVDMLRKHTYLHELHQSKRNAGLSGLDRKHNRSLSGLDSEARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKPGDIVSFLKSPGQDKQLYIEWKSRKASPTTDPNINPVHIVRLFGVDIVKASSPNTGCGEKRRELEFLAFQCTKKQRIVGAL 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8119732 8121180 + Cp4.1LG01g13750.1 Cpe01g01350 462663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01350 339 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 25 339 IPR044800 GO:0003700
Cpe01g01350 339 MobiDBLite consensus disorder prediction 1 20 - -
Cpe01g01350 339 SMART B3_2 178 283 IPR003340 GO:0003677
Cpe01g01350 339 Pfam B3 DNA binding domain 178 282 IPR003340 GO:0003677
Cpe01g01350 339 SUPERFAMILY DNA-binding pseudobarrel domain 176 281 IPR015300 -
Cpe01g01350 339 ProSiteProfiles AP2/ERF domain profile. 58 113 IPR001471 GO:0003700|GO:0006355
Cpe01g01350 339 MobiDBLite consensus disorder prediction 1 23 - -
Cpe01g01350 339 Pfam AP2 domain 58 105 IPR001471 GO:0003700|GO:0006355
Cpe01g01350 339 SMART rav1_2 58 119 IPR001471 GO:0003700|GO:0006355
Cpe01g01350 339 Gene3D - 167 291 IPR015300 -
Cpe01g01350 339 ProSiteProfiles B3 DNA-binding domain profile. 178 283 IPR003340 GO:0003677
Cpe01g01350 339 CDD AP2 57 114 IPR001471 GO:0003700|GO:0006355
Cpe01g01350 339 CDD B3_DNA 177 265 IPR003340 GO:0003677
Cpe01g01350 339 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 25 339 - -
Cpe01g01350 339 Gene3D AP2/ERF domain 57 114 IPR036955 GO:0003700|GO:0006355
Cpe01g01350 339 SUPERFAMILY DNA-binding domain 57 114 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01350 Cpe-Chr1:8119732 Cpe13g00343 Cpe-Chr13:3208495 6.66E-129 dispersed
Cpe14g00507 Cpe-Chr14:3214566 Cpe01g01350 Cpe-Chr1:8119732 3.05E-43 dispersed
Cpe18g00409 Cpe-Chr18:5283990 Cpe01g01350 Cpe-Chr1:8119732 9.03E-07 transposed
Cpe01g01350 Cpe-Chr1:8119732 Cpe01g01766 Cpe-Chr1:13371389 4.67E-122 wgd
Cpe01g01350 Cpe-Chr1:8119732 Cpe09g00275 Cpe-Chr9:1629908 3.12E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48846 PF02362 B3 2.40E-27 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01350 K09287 - csv:101203784 536.569