Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g01350 | ATGAATGGAGAGAGAATTGAGGGAAATTTCAGGGGGGATGAACTACTAAAGGGAAAACACGGTCCAGGGTCTCATACTAGTCTCTGCCGCGTCGGGAGTGGCTTCACTAGTGTCGTTCTCGACTCTGACTCATGCGGCGTGGAGGCAGAGTCACGCAAATTGCCCTCCTCCCGTTTCAAAGGAGTGGTCCCACAGCCCAACGGCCGCTGGGGCGCACAGATTTACGAGAAGCATCAAAGAGTATGGTTGGGGACTTTCAACGAAGAGGAAGAAGCAGCACGTGCATACGATGTCGCTGCCCAACGCTTCCGCGGCCGTGACGCTGTCACCAATTTTAAAGATGAAGACAACGACGACGACGTATCGGCCTTCCTCAACTCCCATTCCAAAGCAGAGATCGTGGACATGCTACGTAAGCACACTTACCTACACGAGCTCCATCAAAGCAAACGAAACGCCGGGTTATCCGGTTTAGATCGCAAACATAACCGTTCCTTATCCGGGTTGGATTCGGAGGCTCGCGAACTTCTATTCGAAAAAGCCGTAACCCCAAGCGATGTAGGAAAATTGAACCGTCTCGTTATCCCTAAACAACACGCCGAGAAAAACTTCCCTCTCCAAACCGGTTCGACCGCTTCCTCAAAAGGTCTGTTGTTGAACTTCGAGGACGGAGGAGGCAAAGTGTGGCGGTTCCGTTACTCGTATTGGAATAGTAGCCAAAGCTACGTGCTAACCAAAGGGTGGAGCCGGTTCGTGAAAGAAAAGAATCTGAAACCCGGTGACATTGTGAGCTTCCTCAAATCTCCCGGACAGGACAAACAGCTGTACATCGAATGGAAGTCCAGAAAGGCGTCGCCCACAACCGACCCCAACATCAACCCGGTTCACATCGTCCGACTCTTCGGAGTTGACATCGTCAAAGCTTCTTCGCCAAACACTGGGTGCGGCGAGAAGAGGAGAGAATTGGAATTTCTCGCTTTTCAATGTACCAAAAAACAAAGGATAGTCGGAGCATTGTAA | 1020 | 50.98 | MNGERIEGNFRGDELLKGKHGPGSHTSLCRVGSGFTSVVLDSDSCGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDVAAQRFRGRDAVTNFKDEDNDDDVSAFLNSHSKAEIVDMLRKHTYLHELHQSKRNAGLSGLDRKHNRSLSGLDSEARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKPGDIVSFLKSPGQDKQLYIEWKSRKASPTTDPNINPVHIVRLFGVDIVKASSPNTGCGEKRRELEFLAFQCTKKQRIVGAL | 339 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8119732 | 8121180 | + | Cp4.1LG01g13750.1 | Cpe01g01350 | 462663 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g01350 | 339 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 25 | 339 | IPR044800 | GO:0003700 | |
Cpe01g01350 | 339 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cpe01g01350 | 339 | SMART | B3_2 | 178 | 283 | IPR003340 | GO:0003677 | |
Cpe01g01350 | 339 | Pfam | B3 DNA binding domain | 178 | 282 | IPR003340 | GO:0003677 | |
Cpe01g01350 | 339 | SUPERFAMILY | DNA-binding pseudobarrel domain | 176 | 281 | IPR015300 | - | |
Cpe01g01350 | 339 | ProSiteProfiles | AP2/ERF domain profile. | 58 | 113 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe01g01350 | 339 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cpe01g01350 | 339 | Pfam | AP2 domain | 58 | 105 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe01g01350 | 339 | SMART | rav1_2 | 58 | 119 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe01g01350 | 339 | Gene3D | - | 167 | 291 | IPR015300 | - | |
Cpe01g01350 | 339 | ProSiteProfiles | B3 DNA-binding domain profile. | 178 | 283 | IPR003340 | GO:0003677 | |
Cpe01g01350 | 339 | CDD | AP2 | 57 | 114 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe01g01350 | 339 | CDD | B3_DNA | 177 | 265 | IPR003340 | GO:0003677 | |
Cpe01g01350 | 339 | PANTHER | PROTEIN RAV1, PUTATIVE-RELATED | 25 | 339 | - | - | |
Cpe01g01350 | 339 | Gene3D | AP2/ERF domain | 57 | 114 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe01g01350 | 339 | SUPERFAMILY | DNA-binding domain | 57 | 114 | IPR016177 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g01350 | Cpe-Chr1:8119732 | Cpe13g00343 | Cpe-Chr13:3208495 | 6.66E-129 | dispersed | |
Cpe14g00507 | Cpe-Chr14:3214566 | Cpe01g01350 | Cpe-Chr1:8119732 | 3.05E-43 | dispersed | |
Cpe18g00409 | Cpe-Chr18:5283990 | Cpe01g01350 | Cpe-Chr1:8119732 | 9.03E-07 | transposed | |
Cpe01g01350 | Cpe-Chr1:8119732 | Cpe01g01766 | Cpe-Chr1:13371389 | 4.67E-122 | wgd | |
Cpe01g01350 | Cpe-Chr1:8119732 | Cpe09g00275 | Cpe-Chr9:1629908 | 3.12E-168 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48846 | PF02362 | B3 | 2.40E-27 | CL0405 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g01350 | K09287 | - | csv:101203784 | 536.569 |